Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00904 ATGGAGATGGAACGCATGATCGAGTTTCCTCACACACATCTTGATCGGAGGCCCCGTAAGAGGGCTCGTCTGGGCTGGGACGTTGTCCCTGAGGCCCCTAAGGCTCAGGTAGGAATATGTTGTGGACAAGAGATTGCGAATATTCCAAGCTTTGCATCTACAAGAGCACCATCAGATCATTCTTCTAATCCACTATTTGTTAAGGGAGTGGCACGAAATGGTTCTCCCCCCTGGCGAGAAGATGACAAAGATGGGCATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAAATACATAGCAAAATGGGAGAAGGTACTTTTGGGCAAGTGCTGGAATGCTGGGACAGAGAAAAAAAGGAAATGGTTGCAATTAAAATTGTGCGTGGAATCAGGAAATATCGTGATGCAGCTATGATAGAAATTGAGGTGTTGCAACAACTTGGAAAGCATGATAAAGGTGGCAACCGTTGTGTACAAATACGGAACTGGTTTGACTATCGTAACCATATCTGTATTGTGTTTGAGAAGCTTGGGCCAAGCTTATACGATTTTCTACGGAAAAACAATTATCGCTCCTTTCCCATTGACCTAGTTCGTGACATTGGCAGACAACTGTTGGAATGTGTAGCATTCATGCATGACCTACGAATGATACACACTGACTTGAAGCCAGAGAATATATTGTTGGTCTCTGGAGATTATGTGAAAGTACATGACTATAAGAATTTATCTCGATCACCAAGGGACAGTTCTAACTTCAAAAGAGTGCCTAAGTCAAGTGCTATAAAGGTGATTGATTTTGGTAGCACTACTTATGATCGTCAAGATCAAAATTACATTGTATCTACACGGCATTATCGAGCACCAGAGGTTATTCTTGGCCTTGGATGGAGATTTCCTTGTGATATATGGAGTGTTGGCTGTATCCTTGTTGAACTATGCTCGGGTGAGGCTCTGTTTCAAACTCATGAAAACTTGGAGCACTTGGCAATGATGGAGCGAGTCCTTGGTCCATTGCCACAGGAAATGTTAAAGAAAGTAGACCGGCATGCAGAAAAATATGTAAGAAGAGGTAGATTAGATTGGCCAGAAGGTGCAACATCGAGGGATAGCATCAAGGCTGTTCAAAAGTTGGCTCGATTACCGAACTTGATAATGCAGCATGTGGATCACTCAGGTGGGGAATTGATTCATCTTGTGCAAGGGTTGCTTCGATATGATCCCTTACTTAGACTAACTGCTCGTGAAGCTTTACGGCACCCATTCTTTACAAGGGATTCCTTGAGGAGATAG 1302 43.01 MEMERMIEFPHTHLDRRPRKRARLGWDVVPEAPKAQVGICCGQEIANIPSFASTRAPSDHSSNPLFVKGVARNGSPPWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDREKKEMVAIKIVRGIRKYRDAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVRDIGRQLLECVAFMHDLRMIHTDLKPENILLVSGDYVKVHDYKNLSRSPRDSSNFKRVPKSSAIKVIDFGSTTYDRQDQNYIVSTRHYRAPEVILGLGWRFPCDIWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPQEMLKKVDRHAEKYVRRGRLDWPEGATSRDSIKAVQKLARLPNLIMQHVDHSGGELIHLVQGLLRYDPLLRLTAREALRHPFFTRDSLRR* 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5630767 5634746 - CsaV3_1G009040.1 Csa01g00904 515401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00904 433 ProSiteProfiles Protein kinase domain profile. 99 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00904 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Csa01g00904 433 PANTHER KINASE AFC1 1 433 - -
Csa01g00904 433 CDD PKc_CLK 86 426 - -
Csa01g00904 433 SMART serkin_6 99 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00904 433 Pfam Protein kinase domain 99 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00904 433 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 433 - -
Csa01g00904 433 SUPERFAMILY Protein kinase-like (PK-like) 86 428 IPR011009 -
Csa01g00904 433 Gene3D Transferase(Phosphotransferase) domain 1 153 426 - -
Csa01g00904 433 Gene3D Phosphorylase Kinase; domain 1 86 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00904 K08287 E2.7.12.1; dual-specificity kinase [EC:2.7.12.1] - csv:101208356 894.804
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00904 Csa-Chr1:5630767 Csa03g03207 Csa-Chr3:29566652 0 dispersed
Csa01g00904 Csa-Chr1:5630767 Csa01g00706 Csa-Chr1:4473313 7.48E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g850 . . Bda06g00620 Bda15g00536 Bpe12g00674 . . . . . . . . . . Cpe20g00341 . . . . . . . . . . . . . . . Cone2ag0939 Cone16ag0064 . . . Csa01g00904 . . . . . . . . . Bma08g00077 . . . . . Car13g00615 Car18g00195 Cpe09g00994 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001120 4 4 1 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 2 2 2 2 2 2 2 2 2 7 6 3 78
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77769 PF00069 Pkinase 3.90E-48 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00904 Csa_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.330286 0.0 0.0