Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00905 ATGATATCACTTTTCAACCGAAGAACAATGCCTATCCTTCCTTGTTTCAATGAGTCCTTCTCCTCATTCTTCACATTCATCTTCTTCATTTCTCTTCTCATTCTCCTTCTAATCCCCAATCTCAAATCAAAACCCAACAAAAATCTCCCACCCTCTCCACCAAAACTTCCCATAATCGGCAACCTCCACCAACTCGGTCGCCATCCCCATCTCTCTTTCTGCCGCCTCTCCCAAAAGTTCGGCCCCATCATCCTCCTTCAACTCGGACAAATCCCAACTCTCATTATTTCATCTCCAAAAATTGCTAAACAAGCCTTCAAAACCCACGACCTCGCTTTCTCAAGCCGCCCTTTTCTCTTCTCCGCCCAACACATCTTCTACAACTGCACCGACATCGTTTTTTCCCCTTACGGCTCTTACTGGCGCCAAGTCAGAAAAATCTGCATCCTCCAACTCCTTAGCGCCAAAAGGGTTCAATCCTTTTCCCTCATTCGCCAGCAAGAAGTTGCCCGTTTGGTTGATAGAATTTCACACTCAAACAATCGAGTGGATTTGTCAAACTTGTTGGGGCTGTATGCTAATGACGTCCTTTGTCGATCGGCGCTTGGGAGGGAATTTTCCGCGGGTGGTGAGTACCATCTTCATGGGATTCAAAAGTTGCTTGAGGAGTATCAGATTTTACTTGGTGGGTTTTGTATTGGGGATTTGTTCCCTTCTCTGGCTTTTCTTAGTAACTTCACAGGAATGAGATCGAGACTTGCTAGAACAGCTAACGGGTTCGATAAGTTGTTTGATCAAGTTATAGCCGAACATCTGAATCCCGAGAGAGAAAAACTGGAGGAGTCGAAGGATCTTGTTGATGTTTTGCTTGAAATACAAAAGAATGGATCTGATGATAAAGTTCCACTGACTATGGATAACGTTAAGGCCATCATTTTGGATATGTTTGCAGCAGGGACAGACACGACATTTATAGCTTTGGATTGGGGGATGACGGAGCTAATAACACACCCAAAGGCCATGAAAAGAGCACAAAGCGAAATTCGAAGAGTTGTTGGTGATAGAAGAAATGTAACAGAGAGTGATGTTTTAGAAATGCCTTATTTGAAAGCTGTGGTTAAAGAGGTGCTCCGATTGCATCCACCGGCGCCAGTTTTAGTTCCGAGAGAAACTATGGAAGATGTGAGGATTGAAGGGTATGATATTCCAGCTAAAACGAGAGTCTTTGTGAATGTTTGGGGAATTGGGAGAGACCCGGAATCATGGAAGGACCCAGAAAGTTTCGAGCCAGAGAGGTTTTTAGGAAGTGGTGTTGATTATGGAGGATTGGATTTCGAGTTCCTTCCGTTTGGGGGTGGAAGAAGGATTTGTCCAGGTATTACTATGGGGATCGTCACGATCGAGCTTGCTTTAGCTCAAATTTTGCATAGCTTTGATTGGGAACTTCCTAATGGAATTGAAGCTAAAGATTTGGATATGACCGAAGTTTTTGGTATCACAATGCATAGAAAAGCTCGTTTGGAAGCTGTGGCAAAGCCTTACTTTGTGTAA 1551 43.84 MISLFNRRTMPILPCFNESFSSFFTFIFFISLLILLLIPNLKSKPNKNLPPSPPKLPIIGNLHQLGRHPHLSFCRLSQKFGPIILLQLGQIPTLIISSPKIAKQAFKTHDLAFSSRPFLFSAQHIFYNCTDIVFSPYGSYWRQVRKICILQLLSAKRVQSFSLIRQQEVARLVDRISHSNNRVDLSNLLGLYANDVLCRSALGREFSAGGEYHLHGIQKLLEEYQILLGGFCIGDLFPSLAFLSNFTGMRSRLARTANGFDKLFDQVIAEHLNPEREKLEESKDLVDVLLEIQKNGSDDKVPLTMDNVKAIILDMFAAGTDTTFIALDWGMTELITHPKAMKRAQSEIRRVVGDRRNVTESDVLEMPYLKAVVKEVLRLHPPAPVLVPRETMEDVRIEGYDIPAKTRVFVNVWGIGRDPESWKDPESFEPERFLGSGVDYGGLDFEFLPFGGGRRICPGITMGIVTIELALAQILHSFDWELPNGIEAKDLDMTEVFGITMHRKARLEAVAKPYFV* 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5635608 5637524 + CsaV3_1G009050.1 Csa01g00905 515402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00905 516 Pfam Cytochrome P450 50 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00905 516 PRINTS E-class P450 group I signature 77 96 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00905 516 PRINTS E-class P450 group I signature 101 122 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00905 516 PRINTS E-class P450 group I signature 307 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00905 516 PRINTS E-class P450 group I signature 327 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00905 516 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00905 516 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00905 516 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00905 516 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00905 516 Gene3D Cytochrome P450 39 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00905 516 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 23 515 - -
Csa01g00905 516 PRINTS P450 superfamily signature 318 335 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00905 516 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00905 516 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00905 516 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Csa01g00905 516 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 23 515 - -
Csa01g00905 516 SUPERFAMILY Cytochrome P450 50 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00905 - - - csv:101208594 956.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00112 Csa-Chr1:637804 Csa01g00905 Csa-Chr1:5635608 1.15E-154 dispersed
Csa01g00903 Csa-Chr1:5627169 Csa01g00905 Csa-Chr1:5635608 1.39E-144 dispersed
Csa01g00905 Csa-Chr1:5635608 Csa01g00910 Csa-Chr1:5665224 0 dispersed
Csa06g03205 Csa-Chr6:27162625 Csa01g00905 Csa-Chr1:5635608 2.94E-136 dispersed
Csa01g00905 Csa-Chr1:5635608 Csa01g00906 Csa-Chr1:5639661 0 tandem
Csa03g00800 Csa-Chr3:6930394 Csa01g00905 Csa-Chr1:5635608 1.74E-110 transposed
Csa03g02763 Csa-Chr3:26495596 Csa01g00905 Csa-Chr1:5635608 3.10E-131 transposed
Csa03g03365 Csa-Chr3:30433846 Csa01g00905 Csa-Chr1:5635608 2.16E-104 transposed
Csa04g02367 Csa-Chr4:24040378 Csa01g00905 Csa-Chr1:5635608 1.96E-44 transposed
Csa06g01117 Csa-Chr6:9273652 Csa01g00905 Csa-Chr1:5635608 1.47E-75 transposed
Csa01g00905 Csa-Chr1:5635608 Csa05g02264 Csa-Chr5:25259441 1.99E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g851 . . . Bda15g00535 . . . . Cmo13g00794 Cmo18g00165 . . . . . . . Bhi02g00597 . . . . . . Cla06g01705 . . . . . . . . . . Lsi02g00426 Csa01g00905 Chy12g01223 Cme12g01649 Blo13g00153 Blo15g00247 . . Bpe07g00863 . . . . Cmo10g00092 . Cma13g00766 . . . . . . . . . . . . Cla03g00297 . . . . . . . . Chy02g02614 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002472 0 1 0 1 0 4 0 3 2 3 3 4 0 3 2 0 4 4 0 3 5 3 2 2 1 3 1 2 1 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00905 Csa_Chr01 FPKM 6.33622 6.871982 7.608256 8.425156 11.986546 11.751161 12.575101 12.006632 11.745452 11.244604