Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00906 ATGTTCATCCTTCCATCTCTCACTTCATTCTCCACATTCATCTTTTTCATTTCTCTTCTCCGTCTCCTTCTCATACCAAAACTCATATCAAAACCCAACCAAAATCTCCCACCATCCCCACCAAAGCTTCCACTAATCGGCAACCTCCACCACCTAAATAACCATCCCCACCTCTCTTTCTGCCGCCTCTCCCAAAAGTTCGGCCCCATCATCCTTCTTCAACTCGGACAAATCCCAACTCTCATAATCTCATCACTAAAAATCGCCAAAGAAGCCTTCACAACCCACGACCTCTCCTTCTCAAGCCGCCCCCTTCTCTACTCTGCCCAACACATCTTCTACAACTGCACTGACATTGGTTTTTCCCCTTACGGCTCTTACTTGCGCCAACTCAGAAAAATATGCATCCTCCAACTCCTTAATGCCAAAAGAGTCCAATCCTTTGCCTTTATTCGACAACAAGAAGTTGCCCGTTTGGTTAACAGAATCTCCCACTCCACCAATCCAGTGGATCTCACGAGCCTCTTGACAATGTATGCCAATGATGTGCTCTGTCGAATGGCGCTTGGGAGGGAATTTTCCACCGGTGGTGACTACCATCTTCATGGGATTCAAGAGTTACTCGAAGAGTTACAGATGTTGCTTGGTGGCTTCTTTTTTGCGGATTTGTTCCCTTCTCTGTCGTTTATCAGTACGCTAACAGGGACAAAAGCGAGGCTTGTGAAGGCGTTTAGAGCGGTCGATAAGTTGTTAGATCAAGTAATTGCTGAACATAAGAGTCCCGACCGTGAGAAACTTGGAGAATCTAAGGATCTTGTTGATGTTTTGCTTGATATACAGAAGAATGGTTTTGAAGATAAATTTCTCCTTACTATGGATAATGTCAAAGCCATTATTTTGGATATGTTCATTGCAGGAACTGACACCACTTTCATAGCTCTTGATTGGGGGATGACGGAGCTCATAACACACCCAAATGCCATGAAAAGAGCACAAAGTGAAATTCGTAGAGTTGTTGGTGATAGAAGAAATGTAACAGAGAGTGATGTTTTAGAAATGCCTTACTTGAAAGCTGTGGTTAAAGAGGTGCTCCGATTGCATCCACCAGCGCCGGTTTCGGTTCCGAGAGAAACTATAGAAGATGTGAGGATTGAAGGGTATGATATTCCAGCTAAAACAAGGGTTTTTGTGAATATTTGGGCAATTGGGAGAGACCAAGAATGGTGGAAGGATCCAGAAATTTTTGAGCCAGAAAGGTTTTTGGAGAATGAAGTTGATTACAAAGGGCTGAATTACGAGTTCATTCCATTTGGAGTTGGAAGAAGGATTTGTCCAGGCATTATTATGGGAATCACCATAATTGAGCTTGCTTTGGCTCAGATTTTGCATAGTTTTGATTGGGAGCTTCCTAATGGAATTGAAGCTAAAGATTTGGATATGACTGAAGTTTATGGAATCACAATGCATAGAAAAGCTCACTTGGAGGTTGTGGCAAAGCCTTACTTTGCCTCGTCCCTCTCCCATTAA 1527 43.16 MFILPSLTSFSTFIFFISLLRLLLIPKLISKPNQNLPPSPPKLPLIGNLHHLNNHPHLSFCRLSQKFGPIILLQLGQIPTLIISSLKIAKEAFTTHDLSFSSRPLLYSAQHIFYNCTDIGFSPYGSYLRQLRKICILQLLNAKRVQSFAFIRQQEVARLVNRISHSTNPVDLTSLLTMYANDVLCRMALGREFSTGGDYHLHGIQELLEELQMLLGGFFFADLFPSLSFISTLTGTKARLVKAFRAVDKLLDQVIAEHKSPDREKLGESKDLVDVLLDIQKNGFEDKFLLTMDNVKAIILDMFIAGTDTTFIALDWGMTELITHPNAMKRAQSEIRRVVGDRRNVTESDVLEMPYLKAVVKEVLRLHPPAPVSVPRETIEDVRIEGYDIPAKTRVFVNIWAIGRDQEWWKDPEIFEPERFLENEVDYKGLNYEFIPFGVGRRICPGIIMGITIIELALAQILHSFDWELPNGIEAKDLDMTEVYGITMHRKAHLEVVAKPYFASSLSH* 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5639661 5641504 + CsaV3_1G009060.1 Csa01g00906 515403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00906 508 Pfam Cytochrome P450 37 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00906 508 SUPERFAMILY Cytochrome P450 37 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00906 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 437 446 IPR017972 GO:0005506|GO:0016705
Csa01g00906 508 Gene3D Cytochrome P450 29 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00906 508 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 13 502 - -
Csa01g00906 508 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00906 508 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00906 508 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00906 508 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00906 508 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00906 508 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00906 508 PRINTS E-class P450 group I signature 398 422 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00906 508 PRINTS E-class P450 group I signature 434 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00906 508 PRINTS E-class P450 group I signature 444 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00906 508 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00906 508 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00906 508 PRINTS P450 superfamily signature 435 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00906 508 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 13 502 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00906 - - - csv:105434949 939.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00906 Csa-Chr1:5639661 Csa01g00910 Csa-Chr1:5665224 0 dispersed
Csa01g00905 Csa-Chr1:5635608 Csa01g00906 Csa-Chr1:5639661 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g854 . . . Bda15g00533 . . . . . Cmo18g00168 Cma10g00089 . . . . . Cpe04g01587 Bhi02g00596 . . . . . . . . . . . . . . . . . Lsi02g00427 Csa01g00906 Chy12g01222 Cme12g01648 . . . . . . . . . Cmo10g00091 . . Cma18g00201 . . . . Bhi08g01673 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002472 0 1 0 1 0 4 0 3 2 3 3 4 0 3 2 0 4 4 0 3 5 3 2 2 1 3 1 2 1 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00906 Csa_Chr01 FPKM 31.568306 30.142086 45.54697 39.161469 104.711235 108.442589 110.531364 48.898609 47.425976 49.301311