Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00908 ATGTTCATCCTTCCATCTCTCAACGAATCTCTCACTACTTCATTCTCCACATTCATCTTCTTCATTTCTCTTCTCCTTCTCCTTCTCATCCCCAAACTCAAATCAAAACCCAATCAAAATCTCCCACCATCCCCACCTAAACTTCCTCTCATCGGCAACCTCCACCACCTAAATAACCAACCCCACCTCTGTTTCCGCCGCCTCTCCCAAAACTTCGGCCCCATCATCCTCCTTCAACTCGGACAAATCCCAACTCTCATAATCTCATCACCAAAAATCGCCAGAGAAGCCTTCAAAACCCATGATCTCTCCTTCTCAAGCCGCCCCTTTCTCTTCTCCGCCCAACACATCTTCTACAACTGCACTGATATTGCCTTTTCCCCTTACGGCTCTTACTGGCGCCAACTCAGAAAATTCTGCATCCTCCAACTCCTTAGCGCAAAAAGGGTCCAATCTTTTGCCTTCATTCGACAACAAGAAGTTGCCCGTTTGGTTAACAGAATCTCCCACTCCATTAATCACGTGGATCTCACGAGCCTATTGGCAATGTATGCCAATGATGTGCTCTGTCGAATAGCGCTTGGGAGGGAATTTTCCACCGGTGGTGAGTACCATCTTCATGGGATTAAAGAGTTACTCGAAGAATTTCAGATGTTGCTTGGTGGGTTCTTTTTTGCGGATTTGTTTCCTTCTTTGTCGTTTATCAGTACGCTAACGGGGACAAAATCGAGGCTTGTGAAGACGTTTAAGGGGTTCGATAAGCTGTTTGATCAAGTAATTGCTGAACATCAGAGTCCCAACCGTGAGAAACTTGGAGAATCTAAGGATCTTGTTGATGTTTTGCTTGATATACAGAAGAATGGTTTTGAAGACAAATTTCTCCTTACTATGGATAACGTCAAAGGCATTATTTTGGATATGTTTGTTGCAGGATCTGACACGACTTACATAGCTCTTGATTGGGGGATGACGGAGCTCATAACACACCCAAATGCCATGGAAAGAGCACAAAGCGAAATTCGTAGAGTTGTTGGTGATAGAAGAAATGTAACCGAGAGTGATGTTTTAGAAATGCCTTATTTGAAAGCTGTGGTTAAAGAGGTGCTCCGATTGCATCCACCAGCACCGGTTTCGGTTCCGAGAGAAACTCTAGAAGATGTGAGGATTGAAGGGTATGATATTCCAGCTAAAACAAGGGTTTTTGTGAATGTTTGGGCAATTGGGAGAGACCCAGAATCGTGGAAGGATCCAGAAAATTTTGAGCCAGAAAGGTTTCTGGAGAGTGAAGTTGATTACAAAGGGTTGAATTTTGAGTTCATTCCATTTGGAGCTGGAAGAAGGATTTGTCCAGGTATTACTATGGGAATCGTCACGATTGAGCTTGCTTTGGCTCAGATTTTGCATAGCTATGATTGGGAACTTCCTACTGGAATTGAAGCTAAAGATTTAGATATGAGTGAAGTCTTCGGTATCACGATGCATAGAAAAGCTCACTTGGAGGTTGTGGCAAAGCCTTACTTTGCCTCATCCCTCTCCAATTAA 1542 43.64 MFILPSLNESLTTSFSTFIFFISLLLLLLIPKLKSKPNQNLPPSPPKLPLIGNLHHLNNQPHLCFRRLSQNFGPIILLQLGQIPTLIISSPKIAREAFKTHDLSFSSRPFLFSAQHIFYNCTDIAFSPYGSYWRQLRKFCILQLLSAKRVQSFAFIRQQEVARLVNRISHSINHVDLTSLLAMYANDVLCRIALGREFSTGGEYHLHGIKELLEEFQMLLGGFFFADLFPSLSFISTLTGTKSRLVKTFKGFDKLFDQVIAEHQSPNREKLGESKDLVDVLLDIQKNGFEDKFLLTMDNVKGIILDMFVAGSDTTYIALDWGMTELITHPNAMERAQSEIRRVVGDRRNVTESDVLEMPYLKAVVKEVLRLHPPAPVSVPRETLEDVRIEGYDIPAKTRVFVNVWAIGRDPESWKDPENFEPERFLESEVDYKGLNFEFIPFGAGRRICPGITMGIVTIELALAQILHSYDWELPTGIEAKDLDMSEVFGITMHRKAHLEVVAKPYFASSLSN* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5657105 5658974 + CsaV3_1G009080.1 Csa01g00908 515405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00908 513 SUPERFAMILY Cytochrome P450 42 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00908 513 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 18 507 - -
Csa01g00908 513 Gene3D Cytochrome P450 30 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00908 513 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00908 513 PRINTS E-class P450 group I signature 93 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00908 513 PRINTS E-class P450 group I signature 184 202 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00908 513 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00908 513 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00908 513 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00908 513 PRINTS E-class P450 group I signature 403 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00908 513 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00908 513 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00908 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Csa01g00908 513 Pfam Cytochrome P450 42 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00908 513 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00908 513 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00908 513 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g00908 513 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 18 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00908 - - - csv:116401669 989.949
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00908 Csa-Chr1:5657105 Csa01g00910 Csa-Chr1:5665224 0 dispersed
Csa01g00908 Csa-Chr1:5657105 Csa01g00909 Csa-Chr1:5662884 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g856 . . . . . . . . . Cmo18g00169 . Cma11g00063 . . . . . Bhi02g00595 . . . . . . . . . . . . . . . . Cone19ag0174 Lsi02g00430 Csa01g00908 Chy12g01221 Cme12g01644 Blo13g00162 . . . . . . . . . Cmo11g00066 . . . . . . Bhi08g01677 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002472 0 1 0 1 0 4 0 3 2 3 3 4 0 3 2 0 4 4 0 3 5 3 2 2 1 3 1 2 1 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00908 Csa_Chr01 FPKM 0.814286 0.512599 0.585805 0.0 0.647196 0.906707 0.0 0.0 0.0 0.0