Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00913 ATGGCACCGCCTGCACTCCCTCTCTCTCTCCTCTCCCTCTTCCTCTTCCTCTTCTCCATTTCTCTCTCCGCCGCTCTCTCCCCCAACCCTGCTGCCGTTTCTAACCCAGAACTCGTCGTACAAGAAGTACACAGGAGCATAATCAATGCAACGAAGAGGAGGAATTTGGGGTATCTCTCATGTGGGACTGGAAATCCAATCGACGATTGCTGGCGGTGCGATTCCAATTGGGAGAAAAATCGTCAGAGATTAGCTGATTGTGGGATCGGTTTCGGCAAAAATGCCATCGGGGGTCGAGACGGAAAAATCTACGTCGTTACTGACTCCGGCGACGACGATCCCGTCAACCCCAAACCAGGAACTCTCCGTTACGCCGTAATCCAAGACGAACCCCTTTGGATCATCTTCGCTCGCGACATGGTCATTCGATTGAAAGAGGAACTGATTATGAATTCCTTCAAAACCATCGACGGCCGTGGCGCTAGTGTCCATATCGCCGGTGGGCCTTGCATTACGATTCAGTACGTGACGAACATTATAATCCATGGTCTCAACATTCACGACTGCAAACAAGGGGGAAACACAGATGTGAGAGATTCCCCTCGACATTTTGGATTCAGAACCATATCGGACGGTGACGGCGTTTCGATCTTCGGCGGAAGCCATGTTTGGGTTGATCATTGCTCTTTATCAAACTGCAATGACGGGTTAATCGACGCGATTCATGGGTCTACTGCGATTACCATTTCGAACAATTACATGACGCATCATGATAAAGTGATGTTGTTGGGGCACAGTGATTCGTATACTCAGGACAAGAATATGCAAGTCACCATTGCTTTTAATCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCCAGATGCAGACATGGGTATTTTCATGTGGTGAACAATGACTATACACATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCAACCATCAACAGTCAAGGGAACAGATTTGTTGCTCCAAATGACAGATTCAGCAAAGAGGTGACAAAATACGAGGATGCACCAGAGAGTGAGTGGAAGAATTGGCATTGGAGGTCAGAAGGAGATCTCATGTTAAACGGTGCGTATTTCACGGCCTCCGGTGCTGGAGCGTCTTCCAGTTATGCAAGAGCGTCGAGCTTAGGAGCGAGACCATCGTCACTCGTGGGTACAATTACGACCAATGCAGGTGCACTGAACTGCAGAAAGGGCTCTCGTTGCTGA 1242 48.71 MAPPALPLSLLSLFLFLFSISLSAALSPNPAAVSNPELVVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDSNWEKNRQRLADCGIGFGKNAIGGRDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKNWHWRSEGDLMLNGAYFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC* 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5694974 5697739 - CsaV3_1G009130.1 Csa01g00913 515410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00913 413 PANTHER PECTATE LYASE 15 410 - -
Csa01g00913 413 SUPERFAMILY Pectin lyase-like 39 408 IPR011050 -
Csa01g00913 413 Pfam Pectate lyase 149 330 IPR002022 -
Csa01g00913 413 SMART amb_all 139 336 IPR002022 -
Csa01g00913 413 PRINTS Pollen allergen Amb family signature 87 104 IPR018082 -
Csa01g00913 413 PRINTS Pollen allergen Amb family signature 111 136 IPR018082 -
Csa01g00913 413 PRINTS Pollen allergen Amb family signature 147 163 IPR018082 -
Csa01g00913 413 PRINTS Pollen allergen Amb family signature 211 232 IPR018082 -
Csa01g00913 413 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Csa01g00913 413 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Csa01g00913 413 PRINTS Pollen allergen Amb family signature 355 379 IPR018082 -
Csa01g00913 413 PRINTS Pollen allergen Amb family signature 384 407 IPR018082 -
Csa01g00913 413 Gene3D - 64 406 IPR012334 -
Csa01g00913 413 PANTHER PECTATE LYASE 18-RELATED 15 410 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00913 Csa-Chr1:5694974 Csa02g00989 Csa-Chr2:9495612 0 dispersed
Csa01g01041 Csa-Chr1:6486533 Csa01g00913 Csa-Chr1:5694974 2.21E-150 dispersed
Csa06g03495 Csa-Chr6:28593144 Csa01g00913 Csa-Chr1:5694974 9.68E-149 dispersed
Csa05g01868 Csa-Chr5:21944533 Csa01g00913 Csa-Chr1:5694974 0 transposed
Csa01g00913 Csa-Chr1:5694974 Csa02g01789 Csa-Chr2:17302889 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00913 K01728 - csv:101209736 804.668