Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00913 | ATGGCACCGCCTGCACTCCCTCTCTCTCTCCTCTCCCTCTTCCTCTTCCTCTTCTCCATTTCTCTCTCCGCCGCTCTCTCCCCCAACCCTGCTGCCGTTTCTAACCCAGAACTCGTCGTACAAGAAGTACACAGGAGCATAATCAATGCAACGAAGAGGAGGAATTTGGGGTATCTCTCATGTGGGACTGGAAATCCAATCGACGATTGCTGGCGGTGCGATTCCAATTGGGAGAAAAATCGTCAGAGATTAGCTGATTGTGGGATCGGTTTCGGCAAAAATGCCATCGGGGGTCGAGACGGAAAAATCTACGTCGTTACTGACTCCGGCGACGACGATCCCGTCAACCCCAAACCAGGAACTCTCCGTTACGCCGTAATCCAAGACGAACCCCTTTGGATCATCTTCGCTCGCGACATGGTCATTCGATTGAAAGAGGAACTGATTATGAATTCCTTCAAAACCATCGACGGCCGTGGCGCTAGTGTCCATATCGCCGGTGGGCCTTGCATTACGATTCAGTACGTGACGAACATTATAATCCATGGTCTCAACATTCACGACTGCAAACAAGGGGGAAACACAGATGTGAGAGATTCCCCTCGACATTTTGGATTCAGAACCATATCGGACGGTGACGGCGTTTCGATCTTCGGCGGAAGCCATGTTTGGGTTGATCATTGCTCTTTATCAAACTGCAATGACGGGTTAATCGACGCGATTCATGGGTCTACTGCGATTACCATTTCGAACAATTACATGACGCATCATGATAAAGTGATGTTGTTGGGGCACAGTGATTCGTATACTCAGGACAAGAATATGCAAGTCACCATTGCTTTTAATCACTTTGGTGAAGGTCTTGTTCAAAGAATGCCCAGATGCAGACATGGGTATTTTCATGTGGTGAACAATGACTATACACATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCAACCATCAACAGTCAAGGGAACAGATTTGTTGCTCCAAATGACAGATTCAGCAAAGAGGTGACAAAATACGAGGATGCACCAGAGAGTGAGTGGAAGAATTGGCATTGGAGGTCAGAAGGAGATCTCATGTTAAACGGTGCGTATTTCACGGCCTCCGGTGCTGGAGCGTCTTCCAGTTATGCAAGAGCGTCGAGCTTAGGAGCGAGACCATCGTCACTCGTGGGTACAATTACGACCAATGCAGGTGCACTGAACTGCAGAAAGGGCTCTCGTTGCTGA | 1242 | 48.71 | MAPPALPLSLLSLFLFLFSISLSAALSPNPAAVSNPELVVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDSNWEKNRQRLADCGIGFGKNAIGGRDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKNWHWRSEGDLMLNGAYFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC* | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5694974 | 5697739 | - | CsaV3_1G009130.1 | Csa01g00913 | 515410 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00913 | 413 | PANTHER | PECTATE LYASE | 15 | 410 | - | - | |
Csa01g00913 | 413 | SUPERFAMILY | Pectin lyase-like | 39 | 408 | IPR011050 | - | |
Csa01g00913 | 413 | Pfam | Pectate lyase | 149 | 330 | IPR002022 | - | |
Csa01g00913 | 413 | SMART | amb_all | 139 | 336 | IPR002022 | - | |
Csa01g00913 | 413 | PRINTS | Pollen allergen Amb family signature | 87 | 104 | IPR018082 | - | |
Csa01g00913 | 413 | PRINTS | Pollen allergen Amb family signature | 111 | 136 | IPR018082 | - | |
Csa01g00913 | 413 | PRINTS | Pollen allergen Amb family signature | 147 | 163 | IPR018082 | - | |
Csa01g00913 | 413 | PRINTS | Pollen allergen Amb family signature | 211 | 232 | IPR018082 | - | |
Csa01g00913 | 413 | PRINTS | Pollen allergen Amb family signature | 291 | 310 | IPR018082 | - | |
Csa01g00913 | 413 | PRINTS | Pollen allergen Amb family signature | 313 | 332 | IPR018082 | - | |
Csa01g00913 | 413 | PRINTS | Pollen allergen Amb family signature | 355 | 379 | IPR018082 | - | |
Csa01g00913 | 413 | PRINTS | Pollen allergen Amb family signature | 384 | 407 | IPR018082 | - | |
Csa01g00913 | 413 | Gene3D | - | 64 | 406 | IPR012334 | - | |
Csa01g00913 | 413 | PANTHER | PECTATE LYASE 18-RELATED | 15 | 410 | IPR045032 | GO:0030570 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00913 | Csa-Chr1:5694974 | Csa02g00989 | Csa-Chr2:9495612 | 0 | dispersed | |
Csa01g01041 | Csa-Chr1:6486533 | Csa01g00913 | Csa-Chr1:5694974 | 2.21E-150 | dispersed | |
Csa06g03495 | Csa-Chr6:28593144 | Csa01g00913 | Csa-Chr1:5694974 | 9.68E-149 | dispersed | |
Csa05g01868 | Csa-Chr5:21944533 | Csa01g00913 | Csa-Chr1:5694974 | 0 | transposed | |
Csa01g00913 | Csa-Chr1:5694974 | Csa02g01789 | Csa-Chr2:17302889 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00913 | K01728 | - | csv:101209736 | 804.668 |