Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00915 ATGGCGCTTGTACAACAACACCATCTCACATACCCATTTCTTTCCATTGCCGGGGCCAATCTGAAACAAAATACTTCCAATTCTTTTTCATTTTTTCAATCCAATACCCAGAAGCTCGCCTGCTGCTTATGTGCAGCATCCCCGAACCCCTCCACTCAATCTCCATCCCCCATTTTCCTTCATTTGTTCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTCCCTTCTAAGGAAGGTCATGGAGGTAACAAGACGGAAGAGGATTGGAACGACCCATTATTCAGATTTTTCAAATCCCAAACTTCAACGACGCAAGACCCATCACGTGAAAGCAAATTGCCCCTCCAAAAGAACCGCCGTTCGTCCTGGCATCTTGCCTCCGATGTTGAATTTTTCAATGAAGCTGAAGTTACACTGGAGGAAGACAAGGAACAATTGCGTTCTGCGAGTCGGAATTCTAGGGTCTTACCAGGTGGTCCTGTCGGAGAAATAGTGGGAATTGCGAGGAATTTGTCGCAAAATATGACTCTGGGGGAGGCTTTGGGAGAATTTGAAGGAAGAATTAGCGAGAAGGAATGTTGGGAGGTGCTGCGTTTGTTGGGTGAGGAGAATCTTGTGGTATGTTGTTTGTATTTCTTTGAATGGATGGGTTTGCAGGAGACTTCGCTTGTTACATCTCGTGCCTATTCTCTTCTATTTCCATTGTTGGGAAGAGCTGGAATGGGAGAGAAAATTATGGTCTTGTTCAAGAACCTTCCACTCAAGAAGGAATTTCAGGATGTTCATGTCTATAACTCTGCAATTTCTGGACTTATGGTCTGTAAGAGGTATGATGATGCTTGCAAGGTGTACGAGGCCATGGAAACAAATAATGTTAATCCAGATCATGTGACATGTTCTATAATGATTACAGTTATGAGAAAAATTGGCCGCAGTGCAAAGGATTCGTGGGATTACTTTGAGAAAATGAACCAAAAAGGAGTAAAATGGAGTTCTGAAGTTTTGGGTGCTCTGATTAAATCGTTCTGCGATGAGGGGCTGAAGAGTCAAGCACTTATCCTACAATTGGAGATGGAGAAGAAAGGGGTTGCTTCGAACGTGATCATGTATAATACGATCATGGATGCTTTTAGTAAATCGAATCAAATCGAGGAAGCTGAAGGTGTCTTTGCTGAAATGAAATCTAAAGGAGTGAAACCAACGAGTGCAAGTTTTAACATCTTGATGAATGCATACAGTAGGAGGATGCAACCTGAGATTGTTGAGAAGCTTCTGGTTGAAATGAAGGATATGGGATTGGAACCTAATGTAAAGTCATACACTTGCTTGATTAGTGCTTATGGGAGGCAGAAGAAAATGAGTGACATGGCTGCAGATGCATTTTTGAGAATGAAAAAAAATGGTATTAGGCCAACCTCTCATTCATATACAGCTCTGATTCATGCTTATTCTGTTAGCGGTTGGCATGAGAAAGCTTACTCAGCCTTTGAGAACATGTTGCGTGAAGGTTTAAAGCCATCCATTGAAACTTACACGACTCTACTCGATGCGTTTAGGCGTGCTGGTGATACAGTGTCATTGATGAAAATATGGAAGTTAATGATTAGAGAAAAAGTACTAGGGACAAGAGTAACTTTTAACACATTGCTAGATGGGTTTGCAAAACACGGTCATTATGTTGAAGCAAGAGATGTGATCTCTGAGTTTGATAAGATTGGGTTACAACCAACTGTTATGACATACAACATGTTGATGAATGCATATGCTAGGGGAGGTCAACATTTAAAGCTGCCACAGCTGCTGCAAGAGATGGCTGCTCGGGACCTAAAACCCGACTCCGTTACTTATTCTACCATGATTTATGCCTTTGTACGTGTTCGCGATTTCAAAAGAGCTTTCTTCTATCACAAGAAGATGGTAAAAAGTGGACAAGTGCCTGATGTAAAGTCATACCAGAAACTTAAATCGATCTTGGATGTAAAACTTGCTACAAAAAACAGGAAAGACAAGAGTGCCATTCTTGGTATAATAAACAGCAAAATGGGTATGGTGAAAGCTAAGAAGCAGGGCAAGAAAGATGAGTTTTGGAAGACCAAGAGAAGGCATGTAAGAACTCAAGACAGTTTCTCCCGGTGA 2136 41.53 MALVQQHHLTYPFLSIAGANLKQNTSNSFSFFQSNTQKLACCLCAASPNPSTQSPSPIFLHLFEEEEEEEEEEVPSKEGHGGNKTEEDWNDPLFRFFKSQTSTTQDPSRESKLPLQKNRRSSWHLASDVEFFNEAEVTLEEDKEQLRSASRNSRVLPGGPVGEIVGIARNLSQNMTLGEALGEFEGRISEKECWEVLRLLGEENLVVCCLYFFEWMGLQETSLVTSRAYSLLFPLLGRAGMGEKIMVLFKNLPLKKEFQDVHVYNSAISGLMVCKRYDDACKVYEAMETNNVNPDHVTCSIMITVMRKIGRSAKDSWDYFEKMNQKGVKWSSEVLGALIKSFCDEGLKSQALILQLEMEKKGVASNVIMYNTIMDAFSKSNQIEEAEGVFAEMKSKGVKPTSASFNILMNAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTALIHAYSVSGWHEKAYSAFENMLREGLKPSIETYTTLLDAFRRAGDTVSLMKIWKLMIREKVLGTRVTFNTLLDGFAKHGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQHLKLPQLLQEMAARDLKPDSVTYSTMIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLKSILDVKLATKNRKDKSAILGIINSKMGMVKAKKQGKKDEFWKTKRRHVRTQDSFSR* 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5716330 5720773 + CsaV3_1G009150.1 Csa01g00915 515412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00915 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Csa01g00915 711 MobiDBLite consensus disorder prediction 691 711 - -
Csa01g00915 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Csa01g00915 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Csa01g00915 711 Pfam Pentatricopeptide repeat domain 423 483 IPR002885 -
Csa01g00915 711 Pfam Pentatricopeptide repeat domain 496 551 IPR002885 -
Csa01g00915 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 577 611 IPR002885 -
Csa01g00915 711 TIGRFAM PPR: pentatricopeptide repeat domain 510 539 IPR002885 -
Csa01g00915 711 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
Csa01g00915 711 TIGRFAM PPR: pentatricopeptide repeat domain 263 295 IPR002885 -
Csa01g00915 711 TIGRFAM PPR: pentatricopeptide repeat domain 404 437 IPR002885 -
Csa01g00915 711 TIGRFAM PPR: pentatricopeptide repeat domain 580 613 IPR002885 -
Csa01g00915 711 TIGRFAM PPR: pentatricopeptide repeat domain 474 507 IPR002885 -
Csa01g00915 711 TIGRFAM PPR: pentatricopeptide repeat domain 439 472 IPR002885 -
Csa01g00915 711 TIGRFAM PPR: pentatricopeptide repeat domain 614 648 IPR002885 -
Csa01g00915 711 TIGRFAM PPR: pentatricopeptide repeat domain 544 573 IPR002885 -
Csa01g00915 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 612 646 IPR002885 -
Csa01g00915 711 Pfam PPR repeat family 366 413 IPR002885 -
Csa01g00915 711 Pfam PPR repeat family 576 624 IPR002885 -
Csa01g00915 711 Pfam PPR repeat family 260 305 IPR002885 -
Csa01g00915 711 MobiDBLite consensus disorder prediction 65 90 - -
Csa01g00915 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Csa01g00915 711 Gene3D Tetratricopeptide repeat domain 554 671 IPR011990 GO:0005515
Csa01g00915 711 Coils Coil 132 152 - -
Csa01g00915 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 542 576 IPR002885 -
Csa01g00915 711 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 471 IPR002885 -
Csa01g00915 711 MobiDBLite consensus disorder prediction 75 90 - -
Csa01g00915 711 PANTHER OS03G0856100 PROTEIN 1 708 - -
Csa01g00915 711 Gene3D Tetratricopeptide repeat domain 430 537 IPR011990 GO:0005515
Csa01g00915 711 Gene3D Tetratricopeptide repeat domain 161 313 IPR011990 GO:0005515
Csa01g00915 711 Gene3D Tetratricopeptide repeat domain 314 429 IPR011990 GO:0005515
Csa01g00915 711 PANTHER - 1 708 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00915 - - - csv:101209816 1395.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00915 Csa-Chr1:5716330 Csa01g03212 Csa-Chr1:28233260 2.73E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g882 . Blo16g00245 . . . . Bma06g00240 . Cmo13g00801 Cmo18g00086 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00459 Csa01g00915 Chy12g01209 Cme12g01631 . . Bda11g01628 . . . . . . . . Cma13g00772 Cma18g00109 Car13g00619 . . . . . . . . . . Cla03g00315 Cam03g0334 Cec03g0325 Cco03g0338 Clacu03g0335 Cmu03g0941 Cre03g0635 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003460 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 2 1 1 2 2 2 2 2 1 2 2 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00915 Csa_Chr01 FPKM 10.814796 11.30549 6.848127 7.486999 10.86281 13.59414 12.972538 26.277395 26.372005 25.264391