Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00918 ATGGCGTCAAATGAAGGATTTCTAACTGAAGAGCAGCGGGAAGTGCTGAAAATAGCAAGTCAGAATGTGGATGTTTTGTCATCCTCTCCAAAATCTCCCAAAGGCTCACTTCCTGAATATCATATAAAAGCCCCTGCTGGTGGAAAGGTTTCGGCACCTGGAGTTGGTGTGAAGCACGTGCGCAGATCTCACTCTGGGAAGTATATTAGGGTGAAAAAGGATGGGGCTGGTGGTAAGGGCACCTGGGGTAAATTACTCGACACTGATGGTGACTCTCATATTGACAGAAATGATCCTAACTATGACAGTGGCGAGGAACCATATCAACTCGTTGGGTCCACTGTATCAGACCCCTTGGATGATTATAAGAAATCTGTTGTATCGATTATAGAGGAATACTTTAGTACTGGCGACGTGGAATTGGCAGCATCTGACCTTGGAGATCTAGGCAAAAGTGACTATCATCCTTACTTCATTAAACGGCTAGTATCTATGGCAATGGACAGACACGATAAGGAGAAGGAAATGGCTTCAGTTCTTCTCTCAGCTTTGTATGCTGATGTTATCAGTCCTGCCCATATAAGAGATGGATTTTTTATGTTACTAGAATCTGCTGATGATCTTGCAGTCGATATATTGGATGCAGTCGATATCCTTGCTTTGTTCTTAGCTCGTGCTGTAGTTGATGACATACTTCCCCCAGCATTTCTAGCCAGGGCAAGGAAGGCCTTGTCGGATTCATCTAAAGGAACTCAGGCTATTCAGACTGCTGAGAAGAGCTATCTCTCAGCTCCTCATCATGCAGAGCTTGTGGAGAAGAAATGGGGAGGCAGCACACACTTTACAGTTGAGGAAGTGAAGAAAAAAATTGCTTATCTCTTGAGGGAATATGTTGAGAATGGAGATACTTTTGAGGCTTGCAGGTGTATAAGACAGTTAGGTGTTACATTCTTTCACCATGAGGTTGTTAAGAGGGCTTTGACTCTTGCCATGGAAATTCGAACAGCAGAACCCCTTATACTGAAACTTCTGAAGGAAGCTGCTGAGGAAGGTCTTATAAGTTCAAGTCAAATGGTCAAGGGATTTTCTCGGTTGGCAGAGAGCCTGGATGACCTTGCTCTTGACATACCATCAGCGAAATCTTTGTATGAATCGTTGATACCAAGGGCCATATCTGAAGGATGGCTTGATGGTTCCTTTGTGAAATCTTCAGTGGAAGATGCGGATATTGGATCGAAAGATGAAAAATTGAGGCGCTACAAGGAAGAGGTTGTGACTATTATTCATGAATATTTTCTTTCTGATGACATTCCTGAATTAATACGGAGCCTAGAAGATCTGGGTGCACCCGAGTATAACCCAGTCTTTTTGAAGAGACTTATTACACTAGCAATGGATAGGAAAAACAGAGAAAAAGAAATGGCTTCGGTGCTCCTTTCAGCTCTTCATATTGAGATATTTTCTACAGAGGATATAGTCAATGGTTTTGTGTTGCTATTGGAGTCTGCAGAAGATACAGCGCTAGACATCTTGGATGCATCAAATGAGCTTGCTCTCTTCCTGGCCAGAGCTGTGATCGACGATGTTTTAGCTCCTCTGAATCTGGAGGATATTGCTAGCAGGTTGATCCCGAATTGTACTGGAAGTGAGACTGTCCGAATGGCACGGTCATTAATTGCAGCTCGTCATGCTGGTGAAAGGCTTTTGAGATGCTGGGGTGGTGGAACTGGCTGGGCAGTGGAGGATGCGAAGGACAAGATTCAGAAACTCTTGGAGGAGTATGAAAGTGGAGGCGTCGTGAGTGAAGCTTGCCAGTGTATCCGTGATCTAGGGATGCCTTTCTTCAACCATGAGGTTGTGAAGAAAGCATTGGTTATGGCCATGGAGAAGAAAAATGACAGGATTCTAGATCTGCTGCAGGCATGCTTCAATGTCGGCCTGATCACCATCAACCAAATGACTAAAGGCTTCTCTAGAATCAAAGACAGCCTCGACGATCTCGCACTTGACATTCCAAATGCAAGCAAGAAGTTCACATCCTACGTGGAGCATGCCCAGAAGAAAGGATGGCTCTTACCGTCATTCGGATCATCTGCTGGTGCAGATTCTTCACTGCTCTTGTCTGCAGCTTCCTGA 2136 44.48 MASNEGFLTEEQREVLKIASQNVDVLSSSPKSPKGSLPEYHIKAPAGGKVSAPGVGVKHVRRSHSGKYIRVKKDGAGGKGTWGKLLDTDGDSHIDRNDPNYDSGEEPYQLVGSTVSDPLDDYKKSVVSIIEEYFSTGDVELAASDLGDLGKSDYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAHIRDGFFMLLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALSDSSKGTQAIQTAEKSYLSAPHHAELVEKKWGGSTHFTVEEVKKKIAYLLREYVENGDTFEACRCIRQLGVTFFHHEVVKRALTLAMEIRTAEPLILKLLKEAAEEGLISSSQMVKGFSRLAESLDDLALDIPSAKSLYESLIPRAISEGWLDGSFVKSSVEDADIGSKDEKLRRYKEEVVTIIHEYFLSDDIPELIRSLEDLGAPEYNPVFLKRLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVLLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEDIASRLIPNCTGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIQKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRILDLLQACFNVGLITINQMTKGFSRIKDSLDDLALDIPNASKKFTSYVEHAQKKGWLLPSFGSSAGADSSLLLSAAS* 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5721955 5726721 + CsaV3_1G009180.1 Csa01g00918 515415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00918 711 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 694 - -
Csa01g00918 711 ProSiteProfiles MI domain profile. 419 540 IPR003891 -
Csa01g00918 711 SUPERFAMILY ARM repeat 282 404 IPR016024 -
Csa01g00918 711 SUPERFAMILY ARM repeat 120 279 IPR016024 -
Csa01g00918 711 ProSiteProfiles MI domain profile. 285 406 IPR003891 -
Csa01g00918 711 PANTHER PROGRAMMED CELL DEATH 4 1 694 IPR039778 GO:0045892
Csa01g00918 711 SUPERFAMILY ARM repeat 417 575 IPR016024 -
Csa01g00918 711 Gene3D - 115 263 - -
Csa01g00918 711 Gene3D - 412 562 - -
Csa01g00918 711 Gene3D - 272 404 - -
Csa01g00918 711 Gene3D - 570 698 - -
Csa01g00918 711 Pfam MA3 domain 286 397 IPR003891 -
Csa01g00918 711 Pfam MA3 domain 421 530 IPR003891 -
Csa01g00918 711 Pfam MA3 domain 123 233 IPR003891 -
Csa01g00918 711 Pfam MA3 domain 584 691 IPR003891 -
Csa01g00918 711 ProSiteProfiles MI domain profile. 582 701 IPR003891 -
Csa01g00918 711 SUPERFAMILY ARM repeat 579 696 IPR016024 -
Csa01g00918 711 SMART ma3_7 122 233 IPR003891 -
Csa01g00918 711 SMART ma3_7 420 531 IPR003891 -
Csa01g00918 711 SMART ma3_7 583 692 IPR003891 -
Csa01g00918 711 SMART ma3_7 286 397 IPR003891 -
Csa01g00918 711 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00918 - - - csv:101209979 1327.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00918 Csa-Chr1:5721955 Csa01g01904 Csa-Chr1:15915813 4.97E-06 dispersed
Csa01g00918 Csa-Chr1:5721955 Csa04g02620 Csa-Chr4:25638230 2.24E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g883 Blo04g00711 Blo16g00247 . . . . Bma06g00241 . Cmo13g00804 Cmo18g00181 . . . . . Cpe20g00337 . . . . . . . . . . . . . . . Cone2ag0946 Cone16ag0054 Cone13ag0195 Cone19ag0188 Lsi02g00460 Csa01g00918 . Cme12g01630 . . Bda11g01627 Bda14g00784 . Bpe15g00662 . . Sed08g2468 . . Cma13g00774 Cma18g00205 Car13g00620 Car18g00200 Cpe09g00991 . Bhi08g01687 Tan05g2890 Cmetu12g0918 Lac10g0533 Hepe07g2167 . . Cla03g00317 Cam03g0335 . . Clacu03g0336 Cmu03g0942 Cre03g0636 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003831 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00918 Csa_Chr01 FPKM 5.874588 3.443963 2.257344 2.671644 1.67494 1.163481 1.587236 1.622291 0.877858 0.824575