Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00919 ATGTATATATTCAACAAAAGAAGAAAAAATCTTCATCGTGCATTAAAAATACTCCAAAATATCAGTAAGGCTTATGTAAAAACCGGTCTGATTATATCCACATCCAAACACCGGCTAGGTAATTCGCGTAACCAAACATGGGTCTTCTTCTTTCCTTCTTTATTTCTTTCTCGTCAACAGTCGCAGCGCGCAGTCTTTAACCACAGAAAAGCTTCAGCTGCTCCCAAAATGCCTCTCAAGACCGAACATGGAGCACCCGACAGCTCCCTTGATGACCATTCGAAAGCGGTCTATTCTTCTAAAGTCGTTGTTCTTGCTGACCTCAACGTTGATCCTCCAGAAATGGACGACGACAGTTCCGTTCACGTTTCAGCTTCGACTATCTCCAGGTTATCTGTGGATGAGAGCAATCATGACAAAACTACGGAAATTTGCAAGGATACTAATGCAATGGAAGTTGAAGGTAGACGTGTAAGCAAAATTGGAAAGTGCCGTTCAAGAAATAATAAGGTAGAGTACTCTCTTGATTCTGCAGCTGATCCAGATGGTGATCAACATGGTCAAGGTGTTTCAACTTCACGCGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTAGTTCATGTAGCAAGAAAGATGCCAAAAAATGCTCACGCTCATTTCATTCTTGGCCTAATGTACCAGAGGTTGGGCCAGCCACAGAAGGCTGTTTTAGCATATGAGAAGGCAGAGGAGATCCTACTCCAAAGTGATGTTGAGATTCACAGGCCAGAGTTTCTCTCACTGATCCAAATCCATCATGCACAGTGTCTCCTTCTAGAAAGTGTAGGGGATAATACTTCAAATGAAGAACTTGAACAGGAGGAGCTTGATGACGTTTGTTCTAAACTTAAGCATTCAATGCAATCTGATGTAAGACAGGCAGCTGTGTGGAATACCCTAGGCTTGTTACTTCTAACAACTGGTCGAGTGAAGAGTGCTATTACAGTGTTGTCGTCCCTGTTGGCCATTGTTCCTAACAATTGTGATTGCCTTGGAAACCTTGGAATTGCTTATCTTCAAAGTGGTAATATGGAACTATCAGAAAAATGTTTTCAAGAATTGATCCTGACAGATCAAAATCACCCTGCTGCTCTCATCAACTATGCTGCTTTTCTCTTGTGCAAGTATGGTTCTACTGTTGTAGGTGCTGGAGCAAATGCTGGTGAAGGGGGTGTTGATGAGAAGGTTGTAGGTATGAATGTTGCAAAGGAATGTTTGCTAGCGGCCCTAAAGGTAGATCCAAAAGCAGCACATGCCTGGGCAAATCTTGCTAATGCTTATTTTGTGACTGGGGACCACAGAAGTTCTGCCAAGTGCTTGGAGAAGGGAGCAAAACTGGAGCCAAATTGCATGTCTATGAGATATGCTGTTGCTATGCACCGGCTGAAGGATGCAGAAAGGTCTCAAGATCGTAGTGAGCAGCTCTCCTGGGCTGGAAATGAAATGGCCTCAGTCATTAGAGATGGAGATGGCTTGACAATTGATCATTCTGTAGCATGGGCTGGGCTTTCCATGGTTCACAAGACTCAACATGAAATTGCTGCAGGATTTCGTACAGATCAAAGTGAACTGAGAGAAAAGGAAGACCACGCCGTCTACAGTTTAAATCAGGCAATAGCTGAGGACACAGATGATGCTGTTCAGTGGCATCAATTCGGTCTCCATAGCCTCTGTACACGAGAATTTAAAACATCACAGAGATACCTCAAAGCCGCAATTGCCCGCTTTAAGAACTGTAGCTTTGCATGGTCAAACCTAGGTATCTCACTACAACTCTCAGACAACCCGACAGAGGCGGAAGAAGTATACAAGAAAGCTTTGTCATTGGTAGCCACAGAACAAGCACATACCGTATTTTGTAACCTTGGAAATCTATATCGACAGCAAAAGCAGTATGAACGTGCCAAAGCTATGTTCTCAAAGTCATTAGAACTACAACCTGGTTATGCACCTGCATTTAACAATCTAGGATTGGTGTTTATTGCTGAGGGTCAATGGGAGGAGGCTAAGTATTGTTTTGAGAAAGCTCTCGAGGCTGATCCGTTACTCGATTCAGCTAACTCGAACTTGCTTAAAACAGTAGCTGTACATCGACTATGTAATAGCTTATCATCGTGTCATGTTAAAGATTGA 2172 43.0 MYIFNKRRKNLHRALKILQNISKAYVKTGLIISTSKHRLGNSRNQTWVFFFPSLFLSRQQSQRAVFNHRKASAAPKMPLKTEHGAPDSSLDDHSKAVYSSKVVVLADLNVDPPEMDDDSSVHVSASTISRLSVDESNHDKTTEICKDTNAMEVEGRRVSKIGKCRSRNNKVEYSLDSAADPDGDQHGQGVSTSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVLAYEKAEEILLQSDVEIHRPEFLSLIQIHHAQCLLLESVGDNTSNEELEQEELDDVCSKLKHSMQSDVRQAAVWNTLGLLLLTTGRVKSAITVLSSLLAIVPNNCDCLGNLGIAYLQSGNMELSEKCFQELILTDQNHPAALINYAAFLLCKYGSTVVGAGANAGEGGVDEKVVGMNVAKECLLAALKVDPKAAHAWANLANAYFVTGDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLKDAERSQDRSEQLSWAGNEMASVIRDGDGLTIDHSVAWAGLSMVHKTQHEIAAGFRTDQSELREKEDHAVYSLNQAIAEDTDDAVQWHQFGLHSLCTREFKTSQRYLKAAIARFKNCSFAWSNLGISLQLSDNPTEAEEVYKKALSLVATEQAHTVFCNLGNLYRQQKQYERAKAMFSKSLELQPGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVHRLCNSLSSCHVKD* 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5726954 5735122 + CsaV3_1G009190.1 Csa01g00919 515416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00919 723 Gene3D Tetratricopeptide repeat domain 505 708 IPR011990 GO:0005515
Csa01g00919 723 ProSiteProfiles TPR repeat region circular profile. 629 660 - -
Csa01g00919 723 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 83 721 - -
Csa01g00919 723 SUPERFAMILY TPR-like 210 385 IPR011990 GO:0005515
Csa01g00919 723 MobiDBLite consensus disorder prediction 70 92 - -
Csa01g00919 723 SUPERFAMILY TPR-like 415 473 IPR011990 GO:0005515
Csa01g00919 723 Pfam Tetratricopeptide repeat 430 463 IPR019734 GO:0005515
Csa01g00919 723 Pfam Tetratricopeptide repeat 216 245 IPR019734 GO:0005515
Csa01g00919 723 Pfam Tetratricopeptide repeat 344 373 IPR019734 GO:0005515
Csa01g00919 723 MobiDBLite consensus disorder prediction 173 198 - -
Csa01g00919 723 SMART tpr_5 341 374 IPR019734 GO:0005515
Csa01g00919 723 SMART tpr_5 216 249 IPR019734 GO:0005515
Csa01g00919 723 SMART tpr_5 430 463 IPR019734 GO:0005515
Csa01g00919 723 SMART tpr_5 629 662 IPR019734 GO:0005515
Csa01g00919 723 SMART tpr_5 663 696 IPR019734 GO:0005515
Csa01g00919 723 SMART tpr_5 307 340 IPR019734 GO:0005515
Csa01g00919 723 SMART tpr_5 593 626 IPR019734 GO:0005515
Csa01g00919 723 ProSiteProfiles TPR repeat profile. 430 463 IPR019734 GO:0005515
Csa01g00919 723 SUPERFAMILY TPR-like 539 694 IPR011990 GO:0005515
Csa01g00919 723 ProSiteProfiles TPR repeat profile. 307 340 IPR019734 GO:0005515
Csa01g00919 723 ProSiteProfiles TPR repeat region circular profile. 663 694 - -
Csa01g00919 723 Gene3D Tetratricopeptide repeat domain 200 400 IPR011990 GO:0005515
Csa01g00919 723 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 83 721 - -
Csa01g00919 723 ProSiteProfiles TPR repeat profile. 629 662 IPR019734 GO:0005515
Csa01g00919 723 ProSiteProfiles TPR repeat profile. 663 696 IPR019734 GO:0005515
Csa01g00919 723 Pfam Tetratricopeptide repeat 630 692 - -
Csa01g00919 723 Gene3D Tetratricopeptide repeat domain 411 500 IPR011990 GO:0005515
Csa01g00919 723 ProSiteProfiles TPR repeat profile. 216 249 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00919 - - - csv:101210395 1268.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00919 Csa-Chr1:5726954 Csa03g01541 Csa-Chr3:11475634 5.32E-92 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g884 Blo04g00710 . . . . . . . Cmo13g00806 . . . . . . Cpe20g00336 . . . . . . . . . . . . . . . . . Cone13ag0196 . Lsi02g00462 Csa01g00919 Chy12g01208 Cme12g01629 . . . Bda14g00783 . Bpe15g00663 Bma03g00758 . . . . Cma13g00775 . Car13g00621 . . . Bhi08g01689 . . Lac10g0534 . . . Cla03g00319 . . . Clacu03g0337 Cmu03g0943 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009614 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00919 Csa_Chr01 FPKM 6.264997 6.208687 2.292725 1.664312 11.688831 12.488143 11.331366 1.272332 1.127036 0.848467