Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00920 ATGGCAGGCACAGCCATGGCCGCGGAGCCGACTCAAGAGGTACTTTCTTGGCTCAAAACCCTACCGTTAGCTCCTGAATATCACCCGACTTTAGCAGAGTTTCAAGATCCAATTTCATATATTTTCAAGATCGAAAAAGAGGCTTCTAAGTTTGGAATCTGTAAAATTGTGCCCCCTGTTCCTCCTTCACCGAAGAAAACTGTAATTGTCAATTTCAATAAGTCGCTTGCAGCTCGTGCTGCCCCCTGTTCTGACTCGACTAATTCTAAGTCTCCGCCTACATTCACTACTCGACAACAACAGATCGGGTTTTGTCCGAGGAAAACACGACCGGTTCAGAAATCAGTGTGGCAGAGTGGTGAGTATTATACATTCCAGCAATTTGAGGCTAAGGCGAAGAACTTTGAGAAAAGCTATTTGAAGAAATGTACGAAGAAAGGAGGGCTTTCGCCTTTGGAAATCGAAACGCTCTATTGGAGGGCAACTTTGGACAAGCCCTTTTCTGTGGAATATGCAAACGATATGCCTGGTTCAGCTTTTGTGCCAGTAAGTGCTAAAATGTTCAGGGAGGCAGGGGAAGGAACAACGCTTGGGGAAACGGCGTGGAACATGAGGGGTGTGTCTAGGGCGAAAGGGTCTCTGTTGAAGTTTATGAAGGAAGAGATTCCTGGAGTGACTTCGCCAATGGTGTATGTTGCTATGATGTTCAGTTGGTTTGCTTGGCATGTGGAAGACCATGACTTGCATAGTTTGAATTATCTGCATATGGGGGCGGGAAAGACATGGTATGGCGTACCTAGAGATGCTGCTGTGGCTTTTGAGGAGGTTGTAAGGGTTCAGGGATACGGAGGAGAAATTAATCCACTTGTAACTTTTGCTGTTCTTGGTGAGAAGACTACTGTGATGTCACCTGAAGTTTTAGTTAGCGCTGGTGTTCCATGTTGCAGGTTAGTGCAAAATGCAGGTGAATTTGTTGTCACTTTTCCTCGAGCTTATCATACAGGTTTCAGCCATGGATTTAACTGTGGGGAGGCAGCCAATATTGCAACTCCAGAATGGTTAAATGTTGCAAAAGATGCTGCAATTCGTAGAGCTTCGATCAATTATCCTCCTATGGTCTCTCATTATCAGTTGCTATATGATCTTGCTTTAAGTTCCAGAGCTCCTCTGTGCACTGGTGCGGAACCAAGAAGTTCACGACTAAAAGATAAAAGGAGGAGTGAAGGAGACACAGTTATTAAAGAGTTATTTGTACAGAATATTGTCGAGAATAACAGCCTGCTGGACAATCTTGGGGGAGGAGCTTCAGTTGTACTTCTTCCCCCAGGTTCTTTAGAATCTATTTATTCAAGACTGCGTGTTGGATCCCACCTGAGGTCAAAACCTAGATTTCCTACTGGCGTTTGCAGTTCTAAGGAAGAAACCAAATCTCCTCAAAGTTTTGATTATGATAATCTCGCACTAGAAAATAGCCCGGTAATTAATCGAGTGAAAGGTTTCTATTCGGCGAATGGGCCATATTCTACTCTATCTGAAAGAAGCACGGACAATGTATGTGCTTCAAGTTTAAGGCCTTTGAATGCGAACAATGAACGGGGTGGTAATGTTCAAAGCAATGGATTATCAGATCAAAGACTGTTTTCTTGTGTTACATGTGGTATTTTAAGTTTTGCCTGTGTAGCCATCATCCAACCCAGAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCCGGGATAGCCAGTGAAGGGATTTCTACTAGAGATCGGCATCCAGTTAGCTCTCAGCAGATTAGTAACAGTGGAAAAAGAGATAAGTGTGTCTCTGATGGGTTGTATGACGTCCCAGTCCAGGCTGTCAATCGCCAGCTTCCATTAGCAGGTGAAAGTTACGAAGCAAACTTAAATACTGAAAAACGAAATGAGACTTCTGCCCTTGGCATGCTTGCATTGACTTACGGACATTCTTCTGATTCCGAGGAGGACAATGCTGAAGCAGATGCTGCTTTAAATGTGGATGATGCTAAACTAATGATTTGTTCTTCAGAAGACCAATATCAGTTTGAAAATTCTGGCCTTACTTCTGGTGAATATAGTAAGAATACTGCAATTTTGAATCACGACCCCTCGTCATTTGGTATTAACTCTGCAGATCATATGCAATTTCAAGTCAATGACTATGAAGAATTTCGACGAGCTGATTCCAAAGACTCGTTCAATTGTTCTTCTGAGTCTGAAATGGATGGCATAGGTTCAACGAAGAAAAACGGTTTAACTAGATATCAAGATTCACATGTGAATGGCAGATCTTCCTTAGATGCTGATACTGAAAAACCAGTGTTTGACAAGTCCACTGAAACTGTCGAGACTGAGAATATGCCATTTGCTCCAGATATCGATGAAGACTTCTCTAGATTGCATGTATTTTGTCTAGAGCATGCAAAAGAAGTGGAACAACAACTTCGACCAATTGGAGGAGTGCACATTCTTTTACTTTGTCATCCAGACTATCCGAAGATGGAGGCAGAAGCAAAACTGGTGGCACAAGAGTTAAGTATGAGTCATCTATGGACTGATACGATATTCAGAGATGCCACCCAAGATGAAGAAAAGAGGATTCAGTTAGCTTTAGATAGCGAGGAAGCAATTCCGGGTAATGGAGATTGGGCTGTAAAGTTGGGAATAAATCTCTTTTATAGTGCCAACCTTAGTCACTCTCCTCTTTATAGTAAGCAGATGCCATACAACTCTGTTATTTATAATGCATTTGGCCGTAGTACTTCTGCCAACTCTTCTGGTAAGCCAAAAGTCTATCAAAGGAGGACTGGAAAGTTGAAAAGAGTAGTTGCAGGGAAATGGTGTGGGAAAGTCTGGATGTCCAATCAAGTTCATCCTTTGCTGGAGAAGAGAGATCCTCAAGAAGAAGATGTAGACATCTTTCCTTCTTGGACGATGTCAGATGAGAAGGTTGATAGGAAATCGGCAAATATCCAGAAAAATGAGACTGTTAAGGTAAATAGAAAGTCTGCTGGCAAGAGAAAAATGACTTATGGGCGCGAAACAATTAAGAAAGCCAAACTTGTAGAGTCAGAGGACATGGTTTCAGATGCTTCGGTTGAAGATTGTATCCATCAGCATCATAGTATTCTACGGAACAAGCAATCCAAATTTGTTGAATGCAATGATCCAATGTCGGATGATTCTGTGGAGGATGATTCTTCTAGAAAACATGGAGTTCCCGTCAGCAAGGGAGCGCCATATTTTGGTACAGATGATACCGGTTCAGATGATTCTCTTGGAGATCGTCATACTCTGCACAGAGGGTTCTCTGGATTCAAGCTACCCAGATGGGGTGAGATAGAACCTTCAGTTTCTGATGATTCCTTAGAGCACTATTCTTCTCAGCATCGTGGGAAAAATATTAAAAGCAGGACAGGAAAATACATTGAGAGACAAGATGCACTTTCAGATGAGTGTCTGGAGAGTGGCTCTCTTAAGCAATATAGAAGGATTCCGAAAAGCAAACAAACCAAAGTTCTTAAAAAGAATGCCATTTTACATGATATACGAGATGACAGTTTTCTTTGGCATCATCAAAAGCCCTCCAGAATCAAGAAGGCCAAATTTATTGAGACTGAAGATGCAGTTTCAGAGCACTCCCTAGAAAATAGTTCTCATCAGCATAGAAGTATGCCTCAAATAAAACCAGCCAAGCACACTGCGTGGGAAGATGCATTTTCAGATGATCCAGATGAAGATGATAATTCTCTTCTGCAGCATCGGAATGTTAGAAGTAACATGCAATTCCGAGAAATTACATCAGACGATCAGCTTGATGATGGCGCTAATCAATATAGTAGGAGGGTACTCCGAAGGAAGCCGGTCAAGACAGAGACAATTTCGCAAATGAAACAGGAGATCCTGCGACCTGTAAAGCGAGGAGCCTCCCAGACTTTGAAAGAAGAATTTGCTCAATCTTTAAAACGTGGAGGCCGCCATACATTAAAATTAGAGACCCCTCAGCCAAAAATACACCATGCCACAAATCGACGCGGTAAGAGGAATGAAAAATTGACTGATTTAGAATCAGAAGACGAGCAACCAGGTGGACCTAGTACACGTCTTAGAAAAAGAACTCCAAAACCTACTAAACTTTCAGAAGCAAAAGTGAAAGATAAAAAACCAGTTGCCAAGAAAAAGATGAAGACTGGTTCATCTTTGAAGACTCCAGCAGGCCATAGAGATTCGAAAGCAAGGGATGAGGAATCAGAATATCTTTGTGACATCGAGGGTTGCAATATGAGTTTTGGTACAAAACAAGAACTTGCCTTACACAAACGAAATATCTGTCCTGTCAAGGGGTGTGTGAAGAAGTTTTTCTCACACAAGTACCTTGTGCAGCATCGTCGAGTCCACATGGACGATCGTCCCCTCAAATGTCCATGGAAGGGCTGTAAGATGACTTTCAAATGGGCATGGGCACGAACAGAACATATTCGTGTCCATACAGGTGCTCGCCCTTATGTTTGCGCTGAACCAGGCTGTGGTCAGACATTCAGATTTGTTTCGGATTTCAGTCGTCACAAGCGGAAGACTGGACATTCGACAAAGAAAGGTAGAGGTTAA 4656 42.44 MAGTAMAAEPTQEVLSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKFGICKIVPPVPPSPKKTVIVNFNKSLAARAAPCSDSTNSKSPPTFTTRQQQIGFCPRKTRPVQKSVWQSGEYYTFQQFEAKAKNFEKSYLKKCTKKGGLSPLEIETLYWRATLDKPFSVEYANDMPGSAFVPVSAKMFREAGEGTTLGETAWNMRGVSRAKGSLLKFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLVTFAVLGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLNVAKDAAIRRASINYPPMVSHYQLLYDLALSSRAPLCTGAEPRSSRLKDKRRSEGDTVIKELFVQNIVENNSLLDNLGGGASVVLLPPGSLESIYSRLRVGSHLRSKPRFPTGVCSSKEETKSPQSFDYDNLALENSPVINRVKGFYSANGPYSTLSERSTDNVCASSLRPLNANNERGGNVQSNGLSDQRLFSCVTCGILSFACVAIIQPREQAARYLMSADCSFFNDWVVGSGIASEGISTRDRHPVSSQQISNSGKRDKCVSDGLYDVPVQAVNRQLPLAGESYEANLNTEKRNETSALGMLALTYGHSSDSEEDNAEADAALNVDDAKLMICSSEDQYQFENSGLTSGEYSKNTAILNHDPSSFGINSADHMQFQVNDYEEFRRADSKDSFNCSSESEMDGIGSTKKNGLTRYQDSHVNGRSSLDADTEKPVFDKSTETVETENMPFAPDIDEDFSRLHVFCLEHAKEVEQQLRPIGGVHILLLCHPDYPKMEAEAKLVAQELSMSHLWTDTIFRDATQDEEKRIQLALDSEEAIPGNGDWAVKLGINLFYSANLSHSPLYSKQMPYNSVIYNAFGRSTSANSSGKPKVYQRRTGKLKRVVAGKWCGKVWMSNQVHPLLEKRDPQEEDVDIFPSWTMSDEKVDRKSANIQKNETVKVNRKSAGKRKMTYGRETIKKAKLVESEDMVSDASVEDCIHQHHSILRNKQSKFVECNDPMSDDSVEDDSSRKHGVPVSKGAPYFGTDDTGSDDSLGDRHTLHRGFSGFKLPRWGEIEPSVSDDSLEHYSSQHRGKNIKSRTGKYIERQDALSDECLESGSLKQYRRIPKSKQTKVLKKNAILHDIRDDSFLWHHQKPSRIKKAKFIETEDAVSEHSLENSSHQHRSMPQIKPAKHTAWEDAFSDDPDEDDNSLLQHRNVRSNMQFREITSDDQLDDGANQYSRRVLRRKPVKTETISQMKQEILRPVKRGASQTLKEEFAQSLKRGGRHTLKLETPQPKIHHATNRRGKRNEKLTDLESEDEQPGGPSTRLRKRTPKPTKLSEAKVKDKKPVAKKKMKTGSSLKTPAGHRDSKARDEESEYLCDIEGCNMSFGTKQELALHKRNICPVKGCVKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKGRG* 1552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5746354 5754071 + CsaV3_1G009200.1 Csa01g00920 515417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00920 1551 MobiDBLite consensus disorder prediction 752 768 - -
Csa01g00920 1551 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
Csa01g00920 1551 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 7 1541 - -
Csa01g00920 1551 Gene3D Cupin 17 369 - -
Csa01g00920 1551 SMART c2h2final6 1435 1457 IPR013087 -
Csa01g00920 1551 SMART c2h2final6 1458 1482 IPR013087 -
Csa01g00920 1551 SMART c2h2final6 1488 1512 IPR013087 -
Csa01g00920 1551 SMART c2h2final6 1518 1544 IPR013087 -
Csa01g00920 1551 MobiDBLite consensus disorder prediction 1336 1355 - -
Csa01g00920 1551 MobiDBLite consensus disorder prediction 1278 1297 - -
Csa01g00920 1551 MobiDBLite consensus disorder prediction 595 615 - -
Csa01g00920 1551 SUPERFAMILY Clavaminate synthase-like 210 378 - -
Csa01g00920 1551 ProSiteProfiles Zinc finger C2H2 type domain profile. 1488 1517 IPR013087 -
Csa01g00920 1551 SMART JmjN_1 23 64 IPR003349 -
Csa01g00920 1551 SMART cupin_9 196 365 IPR003347 -
Csa01g00920 1551 ProSitePatterns Zinc finger C2H2 type domain signature. 1520 1544 IPR013087 -
Csa01g00920 1551 MobiDBLite consensus disorder prediction 1228 1267 - -
Csa01g00920 1551 ProSitePatterns Zinc finger C2H2 type domain signature. 1460 1482 IPR013087 -
Csa01g00920 1551 SUPERFAMILY beta-beta-alpha zinc fingers 1469 1523 IPR036236 -
Csa01g00920 1551 Gene3D Classic Zinc Finger 1456 1542 - -
Csa01g00920 1551 MobiDBLite consensus disorder prediction 1390 1404 - -
Csa01g00920 1551 ProSitePatterns Zinc finger C2H2 type domain signature. 1490 1512 IPR013087 -
Csa01g00920 1551 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 1541 - -
Csa01g00920 1551 MobiDBLite consensus disorder prediction 1072 1111 - -
Csa01g00920 1551 MobiDBLite consensus disorder prediction 1336 1430 - -
Csa01g00920 1551 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Csa01g00920 1551 Pfam jmjN domain 25 58 IPR003349 -
Csa01g00920 1551 ProSiteProfiles JmjN domain profile. 24 65 IPR003349 -
Csa01g00920 1551 MobiDBLite consensus disorder prediction 598 614 - -
Csa01g00920 1551 ProSiteProfiles Zinc finger C2H2 type domain profile. 1458 1487 IPR013087 -
Csa01g00920 1551 ProSiteProfiles Zinc finger C2H2 type domain profile. 1518 1549 IPR013087 -
Csa01g00920 1551 MobiDBLite consensus disorder prediction 1283 1297 - -
Csa01g00920 1551 MobiDBLite consensus disorder prediction 748 768 - -
Csa01g00920 1551 MobiDBLite consensus disorder prediction 1363 1382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00920 - - - csv:101210063 3102.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00920 Csa-Chr1:5746354 Csa06g02272 Csa-Chr6:20361409 1.79E-12 dispersed
Csa01g00920 Csa-Chr1:5746354 Csa03g00140 Csa-Chr3:1095869 6.20E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30686 PF02373 JmjC 1.20E-36 CL0029 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00920 Csa_Chr01 FPKM 1.373169 1.758052 5.297171 5.760434 5.681091 5.755991 6.179568 7.691448 6.561952 8.147549