Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00921 ATGGAACCTTCTGAAGCTGTTTCTGTCCCTAATCACTGTGAAGCACCGCCTTCTGAGTTTCAATCTTCACAGCTTCATAGTTCTGTTCATGATCCTCCACCATTTGATGCACAACATGTACCCACTGATGATCGCATCCATGCAGAACTTCAGAAATTGGATTTGAAGGATGAGAAAGAGGAACCCGTGAAAGATTTTGATGGTGGTGGAGAATGGGAAGTTGAGAAGAATCCTTATGAAGATGAAGGAAATGATACGAAGAAGATCGATGAAAATGATCGAGATAGAAGCGTTAGAAATGATGATGATGATGATTATGATGATGTCGATGAGGAGGTTGATGCCGGCGACGGCGACGGCGGTGAGGTGGAAAGGAAAGGGGACTGGAGAGGCAAAAGCAATCAGTACCCAGTACGGCCTGATGCTGAGGATTGTGCCTTTTACCTTAAGACCGGAACTTGCAAGTTCGGGTCATTTTGCAAATTCAATCACCCTGTTCGAAAGAAAAACCAGGTTGTTTCTGAGAAATTGAAATATGAGGATGATTCAACTGGGACAGCAAACAGAACAGAATGCAAGTTTTACTTGAGGACTGGGGGTTGTAAATTTGGAAATGCCTGTAGATATAACCACACGAGACCAAGAGCGTTAACAAGCCCAATTCTAGAGCTTAACTTCCTTGGTCTGCCAATCCGACCAGATGAAAAAGAATGTCCCTATTACATGCGCACAGGATCCTGCAAATATGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAACCGTTGCTGGATCTGAATCTCTTTCAGGATATAACAATGGAGTTCCCCTACAAGGTGCATCCCAATCACAGATCACATCATGGACTTCACCAAGAGTACTTAATGAAGCCACAACATTTGTACCTGCTATGATTTCACCATCTCAAGATCAAGACTGGAATGGGTACCAGGCTCCCATATATCCATCAGAAATCAGCGTGCTTCCACCTCCAGCATATGTCGTGAACAATATAGCACCTGAGACGGATCTCTATTCTTCTCATCAACAGGTAGATGAATATCCTGAACGACCTGGTCAACCTGAATGCAGTTACTTTCTAAAGACGGGGGATTGTAAATTTAAATCTCTTTGCAAATATCACCATCCGAAGAATCGGAACCCTAAGTTACCGACTTGCACTCTCAATGATAAAGGCCTGCCCTTGAGACCTGATCAGAACGTATGCACGTATTATAGACGCTATGGCATCTGCAAATTTGGGCCATCTTGCAAGTTTGACCATCCTTTTCTTCCTTCTTCTTCAACTGTGGGCGAGCTTGAACAGCAACCTCACTACGGCAACTTTAGCACTGCAGAAGGGGCTGAAATGGCCGGAGGAGCGAGCGGAAACAGTGCCACAGTCGAGCAGTCTGCATAA 1422 44.44 MEPSEAVSVPNHCEAPPSEFQSSQLHSSVHDPPPFDAQHVPTDDRIHAELQKLDLKDEKEEPVKDFDGGGEWEVEKNPYEDEGNDTKKIDENDRDRSVRNDDDDDYDDVDEEVDAGDGDGGEVERKGDWRGKSNQYPVRPDAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQVVSEKLKYEDDSTGTANRTECKFYLRTGGCKFGNACRYNHTRPRALTSPILELNFLGLPIRPDEKECPYYMRTGSCKYGANCKFNHPDPTTVAGSESLSGYNNGVPLQGASQSQITSWTSPRVLNEATTFVPAMISPSQDQDWNGYQAPIYPSEISVLPPPAYVVNNIAPETDLYSSHQQVDEYPERPGQPECSYFLKTGDCKFKSLCKYHHPKNRNPKLPTCTLNDKGLPLRPDQNVCTYYRRYGICKFGPSCKFDHPFLPSSSTVGELEQQPHYGNFSTAEGAEMAGGASGNSATVEQSA* 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5755151 5759299 + CsaV3_1G009210.1 Csa01g00921 515418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00921 473 ProSiteProfiles Zinc finger C3H1-type profile. 358 386 IPR000571 GO:0046872
Csa01g00921 473 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872
Csa01g00921 473 ProSiteProfiles Zinc finger C3H1-type profile. 186 214 IPR000571 GO:0046872
Csa01g00921 473 SUPERFAMILY CCCH zinc finger 189 214 IPR036855 GO:0046872
Csa01g00921 473 PANTHER PROTEIN PHOSPHATASE RELATED 26 472 - -
Csa01g00921 473 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Csa01g00921 473 SUPERFAMILY CCCH zinc finger 233 259 IPR036855 GO:0046872
Csa01g00921 473 SUPERFAMILY CCCH zinc finger 139 168 IPR036855 GO:0046872
Csa01g00921 473 MobiDBLite consensus disorder prediction 1 134 - -
Csa01g00921 473 MobiDBLite consensus disorder prediction 37 101 - -
Csa01g00921 473 ProSiteProfiles Zinc finger C3H1-type profile. 404 432 IPR000571 GO:0046872
Csa01g00921 473 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 26 472 - -
Csa01g00921 473 Gene3D - 317 391 - -
Csa01g00921 473 Gene3D - 123 181 - -
Csa01g00921 473 MobiDBLite consensus disorder prediction 15 29 - -
Csa01g00921 473 MobiDBLite consensus disorder prediction 102 118 - -
Csa01g00921 473 SUPERFAMILY CCCH zinc finger 405 431 IPR036855 GO:0046872
Csa01g00921 473 SMART c3hfinal6 358 385 IPR000571 GO:0046872
Csa01g00921 473 SMART c3hfinal6 404 431 IPR000571 GO:0046872
Csa01g00921 473 SMART c3hfinal6 187 213 IPR000571 GO:0046872
Csa01g00921 473 SMART c3hfinal6 234 259 IPR000571 GO:0046872
Csa01g00921 473 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Csa01g00921 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 165 IPR000571 GO:0046872
Csa01g00921 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 189 211 IPR000571 GO:0046872
Csa01g00921 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 360 385 IPR000571 GO:0046872
Csa01g00921 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 407 431 IPR000571 GO:0046872
Csa01g00921 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 234 258 IPR000571 GO:0046872
Csa01g00921 473 MobiDBLite consensus disorder prediction 450 473 - -
Csa01g00921 473 Gene3D - 404 457 - -
Csa01g00921 473 Gene3D - 182 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00921 - - - csv:101210639 944.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00921 Csa-Chr1:5755151 Csa01g03342 Csa-Chr1:29987598 4.35E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30687 PF00642 zf-CCCH 2.00E-08 CL0537 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00921 Csa_Chr01 FPKM 4.956661 4.704732 17.141504 18.026197 8.356179 7.514622 5.953122 25.438517 23.87542 22.978518