Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00925 ATGGTTTGGTTATGTCTAATGTTAGTACTATATAAACAACAGAGAACATGCACAAAGTTTAAGAGCCGAGTTAAGCAAAAGAACCTTGAAATGATGGTGACTTTAACATATTGCAGTGCCATCTTTATTCTGTTGTTTGCTTTTGCTTCAGCTTCTCCAACTGCAACCGAGACACATCCACGTCTCTTCAATAAGATCTACGCCTTTGGAGACTCGTTTACGGACACCGGCAATACAAGGTCTGTTTCAGGGCCAAGTGGATTTGGCCATGTATCGAATCCTCCTTATGGGAGTACCTTCTTTCACCACCCGACCAACCGATATTCAGATGGACGACTGGTGATTGACTTTGTAGCCCAATCACTGTCCTTACCTCTCTTGCCACCTTACAGATATTTGAAGGGAAATGACTCCTTTCATGGGGTGAACTTTGCTGTTGCAGGATCCACAGCTATAAACCATGAATTCTATGTCAGAAACAACCTTAGCATTGACATTACTCCTCAATCTATCCAAACTCAGCTCCTTTGGTTCAACAAGTTCTTGGAAACTCAAGGATGTAGAGGGGAAGAGACAAAGGCACAGTGCGAAGCTGCATTTGATGATGCCTTGCTTTGGGTTGGTGAAATTGGAGTCAATGATTATGCTTATAGTTTTGGATCTCCTATCTCTCCTGATACCATCCGAAAGCTTGGTGTCGCCAGCGTTACAGGAGTTTTACAGTCTTTGCTGAAGAAAGGTGCAAAGTATATGGTTGTGCAAGGTTTACCACCAAGTGGATGTCTGGCATTATCAATGTCTCTAGCTTCTGTGGATGACAGAGACGATATCGGCTGCGTGAGGAGCCTAAACAACCAAACCTATGTTCATAGTATGGCTCTCCAAGCTTCATTGCAATCTTTAAGAAGACAGTTTCCTGAAGCTGTCATCATATATGCTGATTACTGGAACGCATATCGAACAGTTATTAAGAATCCCAACAAATACGGTTTCAGTGAGCGCTTCAAAGCCTGCTGTGGTGTCGGTGAACCGTACAACTTTGAGTTATTTACTGTCTGTGGAATGTCTTCTGTCAGTTCCTGCAAAACCCCATCTGAGTACATTAACTGGGATGGAGTTCACCTCACTGAAGCTATGTATAAAGTAGTCCATGACATGTTAATTGAAGGTGGATTTACCCATCCTCCTTTCAGTAACTTATTGGACATGAAACGCCACTAG 1221 42.75 MVWLCLMLVLYKQQRTCTKFKSRVKQKNLEMMVTLTYCSAIFILLFAFASASPTATETHPRLFNKIYAFGDSFTDTGNTRSVSGPSGFGHVSNPPYGSTFFHHPTNRYSDGRLVIDFVAQSLSLPLLPPYRYLKGNDSFHGVNFAVAGSTAINHEFYVRNNLSIDITPQSIQTQLLWFNKFLETQGCRGEETKAQCEAAFDDALLWVGEIGVNDYAYSFGSPISPDTIRKLGVASVTGVLQSLLKKGAKYMVVQGLPPSGCLALSMSLASVDDRDDIGCVRSLNNQTYVHSMALQASLQSLRRQFPEAVIIYADYWNAYRTVIKNPNKYGFSERFKACCGVGEPYNFELFTVCGMSSVSSCKTPSEYINWDGVHLTEAMYKVVHDMLIEGGFTHPPFSNLLDMKRH* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5765689 5767748 + CsaV3_1G009250.1 Csa01g00925 515422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00925 406 CDD SGNH_plant_lipase_like 66 390 IPR035669 -
Csa01g00925 406 Pfam GDSL-like Lipase/Acylhydrolase 66 385 IPR001087 GO:0016788
Csa01g00925 406 SUPERFAMILY SGNH hydrolase 65 388 - -
Csa01g00925 406 Gene3D SGNH hydrolase 54 390 IPR036514 -
Csa01g00925 406 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 32 405 - -
Csa01g00925 406 PANTHER LIPASE/HYDROLASE FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 32 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00925 - - - csv:101211626 817.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00925 Csa-Chr1:5765689 Csa06g03688 Csa-Chr6:29565470 7.03E-65 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g899 . . . . . . . . Cmo13g00810 Cmo18g00188 . . . . . Cpe20g00332 . . . . . . . . . . . . . . . Cone2ag0952 Cone16ag0048 . . . Csa01g00925 . Cme12g01625 . . . . . . . . Sed08g2463 . . Cma13g00778 Cma18g00212 . Car18g00204 Cpe09g00986 . Bhi08g01699 Tan05g2902 Cmetu12g0903 Lac10g0540 Hepe07g2160 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009369 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00925 Csa_Chr01 FPKM 6.722821 8.460176 8.021033 7.085052 1.321726 2.200541 2.265765 19.213842 19.863623 20.00573