Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00933 ATGTTCCCTCTTTTTGATTTTAGAGATGTTCAAGAGAAGCTCTCCGCTCAGTTCAGACCTTGGGAACGTTCTTTTCAATTCTGGGTTCGTGTTGCAGACATCTATACTGGTTACAAGGTGCTTCAACTACGGGTGAAATTCGAGAAGGATGTGGAGAAACAGGAGACAATGTGGGAGAATCAGCATGAACATGCAGCTGAGAAGATATATGCTATGTGCTCCGAAATGGGTGGTTTCTTCCTTAAGGTTGCTCAAGTTATTGGGAAGCCGGATTTGGCCCCAGCTGCATGGGTGAAGAGGCTTGTTACACTGTGTGATCAAGCACCAGCAACGCCTTTTGATGTTGTTCAACGTGTGGTGGAGAAGGAACTGCACCGAAGTCTTGGTGATGTCTTTGAAACATTTGATCCTGACCCTCTTGGTTCGGCTTCGATTGCTCAGGTTCACAGAGCTAGGCTAAAGGGTGACAGGGATGACGTTGTGGTCAAGGTGCAACATCCGGGAACTGAGGATCTAATGATGACAGATATCCGTAATTTGCAAGCCTTTGCCTTATACATGCAAAAGACAGATATCAAATTCGATCTATATTCTGTAACTAAGGAAATAGAGAAACAGATTGGTTACGAATTTGATTTTGAGAGGGAGGCCAATGCTATTGAAAGGATCCGGCATTTTCTATATAGCAACAACAAGAAGAGCCCGGTATTGGTGCCACAAGTGATGAAGAATATTGTTACCAGGAGGGTGTTGGTGATGGAATATATTGATGGAATCCCAATCCTCAATCTTGGTGATGAAATGGCAAAGAGAGGCATAGATGCTAGTGGCAGAATTGCTTTAGCAGCAAAGCAGAGAATTCTTAGTAGTTTGACGATGGCATATGGGCAAATGATTTTGAAGAGTGGTTTCTTCCATGCAGATCCTCATCCAGGAAATATATTGATCTGTAAAGGCTCAGAGGTAGCATTGCTTGATTACGGGCAAGTGAAGGATCTTCCTGACCAGTTGAGGCTTGGCTATGCTAAACTTGTTATGGATATTGCAGATGGTGACGCCTCAAGAACAGCTGAAACCTTCAGGGAGCTTGGGATAGATACAATAAGCAATTGTGAAAACGCACAAGAAGAACTATTTAAGTTGGCTCAGGTAATGTTTGACACAAGGTTACCCCCCGGGAAGGTGTTGATGCAACCTTTCGCAGAGGACTCTTCAATAAAGAAAGTTGGTGTTCAGTCGTTTCCAGAGGAACTCTTTTCCATACTTCGGACAATCCAAATCCTTAGAGGATTAAGTGTTGGTCTCGGGATCAATTATTCGTGCTCCGAACAATGGCGACCCATTGCAGAAGAAGCTTTGTTGCTTTCTGGTAGGCTAGAAGGTAGGAAAATGAAAACAACCCACAAACGTGGATTCTTAAAGAGATTGTTTTCAAGATCAAGCTGA 1446 43.43 MFPLFDFRDVQEKLSAQFRPWERSFQFWVRVADIYTGYKVLQLRVKFEKDVEKQETMWENQHEHAAEKIYAMCSEMGGFFLKVAQVIGKPDLAPAAWVKRLVTLCDQAPATPFDVVQRVVEKELHRSLGDVFETFDPDPLGSASIAQVHRARLKGDRDDVVVKVQHPGTEDLMMTDIRNLQAFALYMQKTDIKFDLYSVTKEIEKQIGYEFDFEREANAIERIRHFLYSNNKKSPVLVPQVMKNIVTRRVLVMEYIDGIPILNLGDEMAKRGIDASGRIALAAKQRILSSLTMAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPDQLRLGYAKLVMDIADGDASRTAETFRELGIDTISNCENAQEELFKLAQVMFDTRLPPGKVLMQPFAEDSSIKKVGVQSFPEELFSILRTIQILRGLSVGLGINYSCSEQWRPIAEEALLLSGRLEGRKMKTTHKRGFLKRLFSRSS* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5800683 5807878 + CsaV3_1G009330.1 Csa01g00933 515430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00933 481 ProSiteProfiles Protein kinase domain profile. 134 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00933 481 Pfam ABC1 atypical kinase-like domain 104 358 IPR004147 -
Csa01g00933 481 Gene3D Transferase(Phosphotransferase) domain 1 132 345 - -
Csa01g00933 481 PANTHER - 9 468 - -
Csa01g00933 481 PANTHER ABC1 FAMILY PROTEIN 9 468 - -
Csa01g00933 481 CDD ABC1_ADCK3-like 104 360 - -
Csa01g00933 481 SUPERFAMILY Protein kinase-like (PK-like) 107 330 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00933 K08869 ADCK, ABC1; aarF domain-containing kinase - csv:101212595 956.051
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00933 Csa-Chr1:5800683 Csa03g04426 Csa-Chr3:38627424 7.29E-53 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g913 . Blo16g00252 . . . Bpe13g00214 Bma06g00245 . Cmo13g00814 . . . . . . Cpe20g00328 . . . . . . . . . . . . . . . . Cone16ag0041 . . Lsi02g00475 Csa01g00933 Chy12g01194 Cme12g01617 . . Bda11g01613 . . . . . Sed08g2459 . . Cma13g00782 . Car13g00631 . . . Bhi08g01709 Tan05g2923 Cmetu12g0722 Lac10g0547 Hepe07g2153 . . Cla03g00331 Cam03g0347 Cec03g0338 Cco03g0353 Clacu03g0348 Cmu03g0954 Cre03g0647 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001915 4 2 2 2 2 1 4 2 1 2 1 1 3 2 2 3 1 6 3 1 2 2 2 2 2 1 2 2 5 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00933 Csa_Chr01 FPKM 8.06221 8.483672 8.607346 8.073928 5.501842 6.685845 5.413221 7.627917 9.620878 8.186881