Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00935 ATGGAAGCTGTGGCCATCTTCGGAAGTGGAGCTCCGCCGCGTCTCCGGCCGCCGACGAGAACCTTTTGCAGCTTAGCTCGCTCCCGGACGGCTGTCCTACGCCGTCGCGACCATCTTTCAGCATTTCCTTCGAATTCTAATCTCTTCTTCAAATTGTCTACTCGTTATCGTGCTGCTTCCAGTGACAATGAGTCCTTTATATTTTTGCCACATTTGGTTGCCTCCCTGGAGCGAGTCGACCAGACTTACATTATGGTGAAACCTGATGGCGTTCAACGTGGCCTTGTTGGAGAGATAATTTCGCGATTTGAGAAGAAAGGGTTTAAGCTTACTGGTTTAAAGCTCTTCCAATGCTCCAAGGAGTTGGCTGAGGAACACTATAAAGATCTTAAGGGAAAGTCATTTTTTCCTGGTTTAATTGAGTACATAACATCAGGTCCTGTTGTGTGTATGGCATGGGAGGGTGTTGGTGTTGTGGCATCAGCACGTAAGTTAATCGGAGTAACAAATCCTCTCGAAGCTGAGCCAGGAACAATAAGAGGGGATCTTGCTATTCAAAAAGGAAGGAATGTGATTCATGGGAGTGATAGTCCTGAAAGTGGCAAGCGTGAAGTAGCACTGTGGTTCAAAGAAGGTGAATTGGTAGAGTGGGAGCCAGCTCTTGTACCATGGCTCATAGAGTGA 684 47.22 MEAVAIFGSGAPPRLRPPTRTFCSLARSRTAVLRRRDHLSAFPSNSNLFFKLSTRYRAASSDNESFIFLPHLVASLERVDQTYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKDLKGKSFFPGLIEYITSGPVVCMAWEGVGVVASARKLIGVTNPLEAEPGTIRGDLAIQKGRNVIHGSDSPESGKREVALWFKEGELVEWEPALVPWLIE* 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5809379 5813401 - CsaV3_1G009350.1 Csa01g00935 515432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00935 227 ProSitePatterns Nucleoside diphosphate kinases active site. 190 198 IPR023005 -
Csa01g00935 227 CDD NDPk_I 81 209 - -
Csa01g00935 227 PRINTS Nucleoside diphosphate kinase signature 82 104 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Csa01g00935 227 PRINTS Nucleoside diphosphate kinase signature 126 145 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Csa01g00935 227 PRINTS Nucleoside diphosphate kinase signature 146 163 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Csa01g00935 227 PRINTS Nucleoside diphosphate kinase signature 167 183 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Csa01g00935 227 PRINTS Nucleoside diphosphate kinase signature 190 209 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Csa01g00935 227 Hamap Nucleoside diphosphate kinase [ndk]. 79 214 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Csa01g00935 227 Pfam Nucleoside diphosphate kinase 81 213 IPR034907 -
Csa01g00935 227 SUPERFAMILY Nucleoside diphosphate kinase, NDK 80 226 IPR036850 -
Csa01g00935 227 Gene3D - 75 227 IPR036850 -
Csa01g00935 227 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE II, CHLOROPLASTIC 26 226 - -
Csa01g00935 227 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 26 226 - -
Csa01g00935 227 SMART ndk_5 79 216 IPR034907 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00935 K00940 ndk, NME; nucleoside-diphosphate kinase [EC:2.7.4.6] - csv:101212831 452.595
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00935 Csa-Chr1:5809379 Csa03g00717 Csa-Chr3:6434451 4.49E-66 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g915 . Blo16g00253 . . . Bpe13g00213 Bma06g00246 . Cmo13g00816 Cmo18g00193 . . . . . Cpe20g00326 . . . . . . . . . . . . . . . Cone2ag0956 Cone16ag0039 . . Lsi02g00476 Csa01g00935 Chy12g01193 Cme12g01615 . . Bda11g01612 . . . . . . . . Cma13g00784 Cma18g00217 Car13g00633 Car18g00211 Cpe09g00980 . . . . . . . . Cla03g00334 Cam03g0349 Cec03g0340 Cco03g0355 Clacu03g0350 Cmu03g0956 Cre03g0649 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008226 2 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00935 Csa_Chr01 FPKM 1.757139 2.159659 0.171393 0.242875 0.171678 0.169689 0.174514 0.165808 0.066204 0.153148