Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00946 ATGGCAGATCGGAACTCAAACTTCACCACCTCCCCCCATTCCATTGATCTTCGAAGTGGTTTCTGTCCTCAGACGAAGATTTTCCACAGCCTTCGTCCACCGCTCTCACTTCCACCATTATCTCACCCTCTCTCCGTCATCCAACACGCCTTTTCTCTCCTTCAATCATCTCCTCCCCCTCCAAACTCCACCCTTCTCATCGACTTCAACTCTGGCCTCCATTTGTCCTACACCGTTTTCCTTCGTCAAATTCGAAACCTCGCCTCGAATCTTAAATCTCTAACCTCCCTATGCAATGGCCAAGTCGCGTTTATCCTCGCGCCGACTTCTCTCCAAATCCCTGTGTTGTATTTCGCTCTGTTATCTCTCGGCGTCGTTCTCTCTCCGGCTAATCCAACCAGCTCCGTTTCAGAAATTTCTCATCAGATTCAACTCAGTAAACCGGTCATTGCCTTCGCTACATCCTCAACCGCCTCCAAGCTCCCTAAGCTTCGATTCGGCACCGTTCTCATCGATTCGCCTCATTTCCACTCTATGTTGACCGAAACAAACGGATCCGATGGTATCCCCAACATTAAAATTGATCAATCCGACTCCGCGGCGATTCTTTACTCATCAGGTACTACCGGACGAGTGAAAGGCGTGCTACTGAGTCATCGGAACCTTATTGCGGTGAACGCAGGGCCTAATTCTCTTCAATTGGAGATCCAGGAAGGAGAAATGGAACCGCATCCGGTTGTTCTGTGTCCTTTGCCTTTGTTTCATATTTTCGGATTCGTAATGTTGGTTCGAGCGGTTTCACGAGGAGATACGTTGGTTTTGATGGAGAGATTCGAATTCGAAGGGATGCTAAGAGCAGTGGAGAAGTACAGGGTTAAGTACATTCCAGTTTCGCCGCCGCTAGTGGTGGCGATGGCGAAATCGGAACTGGTGGGGAAATATGATCTGAGTTCTCTTCAAATGTTGGGATGCGGCGGCGCTCCGCTTGGGAAAGAAGTGATCGATAAATTCCATCAGAAATTACCCGGCGTTGAAATTGTCCAGGGATATGGCTTGACAGAGAGTACAGCAGGGGCATCGAGAACTATGGATCCCGAGGAAATTAGCAACACGAAATCAGTAGGTCGCTTATCTGGAAATATGGAAGCCAAGATAGTGGATCCTGCGTCTGGAGATGCCTTACTTCCTAACCACAAAGGAGAGCTTTGGCTGCGAGGTCCAACGATCATGAAAGGTTATGTCGGAGATGACAAGGCAACTACTGAAACCTTGGATCCAGATGGATGGCTAAAAACTGGTGATCTTTGCTATTTTGATTCAGATGGATTCCTCTACATTGTTGATAGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCAGCAGAATTGGAACATTTGCTTCAATCAAACCCCGAAATTATTGATGCTGCCGTGATACCATATCCTGATGAAGAAGCTGGAGAGATTCCTATGGCTTATGTTGTTAGAAAGCCTGGGAGTAACATGTCTGAGGCTCAAGTTATTGATTTCATTGCAAAACAGGTTGCGCCGTACAAGAAAATTCGACGAGTCTCTTTTATCGACGCAATCCCTAAATCGCCTGCAGGTAAGATTCTGAGGAGAGAGCTTGCCAAGCATGCTTTATCACATGGTTCTAGTAAGTTGTAA 1677 46.87 MADRNSNFTTSPHSIDLRSGFCPQTKIFHSLRPPLSLPPLSHPLSVIQHAFSLLQSSPPPPNSTLLIDFNSGLHLSYTVFLRQIRNLASNLKSLTSLCNGQVAFILAPTSLQIPVLYFALLSLGVVLSPANPTSSVSEISHQIQLSKPVIAFATSSTASKLPKLRFGTVLIDSPHFHSMLTETNGSDGIPNIKIDQSDSAAILYSSGTTGRVKGVLLSHRNLIAVNAGPNSLQLEIQEGEMEPHPVVLCPLPLFHIFGFVMLVRAVSRGDTLVLMERFEFEGMLRAVEKYRVKYIPVSPPLVVAMAKSELVGKYDLSSLQMLGCGGAPLGKEVIDKFHQKLPGVEIVQGYGLTESTAGASRTMDPEEISNTKSVGRLSGNMEAKIVDPASGDALLPNHKGELWLRGPTIMKGYVGDDKATTETLDPDGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSNPEIIDAAVIPYPDEEAGEIPMAYVVRKPGSNMSEAQVIDFIAKQVAPYKKIRRVSFIDAIPKSPAGKILRRELAKHALSHGSSKL* 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5872757 5878503 - CsaV3_1G009460.1 Csa01g00946 515443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00946 558 Pfam AMP-binding enzyme C-terminal domain 465 540 IPR025110 -
Csa01g00946 558 CDD 4CL 49 546 - -
Csa01g00946 558 Pfam AMP-binding enzyme 61 456 IPR000873 -
Csa01g00946 558 Gene3D - 452 552 IPR045851 -
Csa01g00946 558 SUPERFAMILY Acetyl-CoA synthetase-like 60 552 - -
Csa01g00946 558 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Csa01g00946 558 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 30 547 - -
Csa01g00946 558 Gene3D - 35 451 IPR042099 -
Csa01g00946 558 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 30 547 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00946 Csa-Chr1:5872757 Csa04g02685 Csa-Chr4:26054439 1.13E-168 dispersed
Csa01g00946 Csa-Chr1:5872757 Csa01g00947 Csa-Chr1:5879598 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00946 K01904 - csv:101213796 1078.16