Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00947 ATGGCTACCCATTCTGTTGATTCTCGGAGCGGTTTCTGTTCTCAAACCAAGATTTACAACAGTCTCCGACCACCGTTATCGCTTCCCCCGTTATCTCAACCACTTACCGTTGTTGGGCATGCCCTCTCTGTTCTCCGATCATCTCCTCCTCCGCCCAACACTCCTGCTCTCATCGACTCCGACTCCAGTGTCAGTGTCTCTTACGCTCTTTTCCTCCGTCAAATTCGAAACCTCACCTCTAACCTTAAAGCTCTTTATTCCTTCTCCAATGGTCAAGTGGCGTTCATTCTTTCACCCACTTCTCTGCAAATCCCTGTGCTGTATTTCGCTTTATTATCACTTGGTGTTGTTGTTTCTCCGGCTAATCCTATCGGTTCCGAATCGGAGATTGCTCACCAGGTTAGTCTCTGTAAACCGGCCATTGCCTTCGCTACTTCCTCAACGGCGTCTAAGATCCCCAGGCCTCCACTTGGCACTGTATTGATAGATGCACCGGAGTTTCTTTCTTTGATGAATGAAAGTAATCCATCGGATGGAGTAAACGATGGAATTTTCGATCTCAAAATCAATCAAAACGACTCTGCGGCGATTCTGTACTCTTCAGGGACTACCGGGCGAGTGAAAGGCGTTTTAATCTCTCACCGGAACCTCATAACGGCGATCACTGGGCTTCAAGTCTTAGATAAAACGCTCGTTGATGGAGAGATTGAGCCACATCCCGTTGCTCTTTGTCTGTTACCTCTGTTTCATGTTTTCGGGTTCTTTATGTTATTTCGATCGATTTCAGAGGGCAATACATTGGTTTTGATGCGTAAGTTCGATTTCGAGAAGATGTTAAGAGCAGTGGAGAAGTATAGGGTTACATACATTCCGGTTTCTCCGCCACTGATTGTGGCCATGGCCAAATCGGAGCTGGCAGCGAAGTATGATCTCAGTTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCTCTTGGTAAAGAAGTCATCGATAAATTCCATGTAAAGTTCCCCAACGTAGAAATTATTCAGGGATATGGATTGACAGAGAGTTCAGGAGGAGCAGCAAAAACTGTGGGGCCTGAAGAATGCAGTACAGCAGGTTCCGTCGGTCGCCTATCGGAAAATATGGAAGCCAAAATAGTCGATCCTTCATCTGGAGAAGCTTTACCTCCTGGCCACAAAGGAGAGCTTTGGATACGAGGTCCAGGAATCATGAAAGGTTATGTTGGAGATGAAAGGGCAACTGCTGAAACCTTGCATCCTGAGGGATGGCTAAAGACTGGTGACCTTTGTTACTTTGATTCTGATGGATTACTCTACATCGTTGATAGATTAAAAGAATTGATCAAGTACAAGGCTTACCAGGTCCCACCTGCTGAATTGGAACATTTGCTTCAATCCCACCCCGAAATACTTGACGCTGCTGTGATACCCTATCCTGATGAAGACGCCGGACAAATTCCATTAGCTTATGTGGTAAGACAACCAGGAAGCAATATCAACGAAGCTCAAGTTATGGATCTCATTGCGAAACAGGTTGCACCATACAAGAAAATTCGAAAAGTTTCTTTTGTGAATGTTATCCCTAAATCGTCTCTCGGGAAGATTCTTAGGAAGGAGCTTGTTAAACATGCTCTCTCCCAAGGTTCAAACAAGCTATAA 1662 45.49 MATHSVDSRSGFCSQTKIYNSLRPPLSLPPLSQPLTVVGHALSVLRSSPPPPNTPALIDSDSSVSVSYALFLRQIRNLTSNLKALYSFSNGQVAFILSPTSLQIPVLYFALLSLGVVVSPANPIGSESEIAHQVSLCKPAIAFATSSTASKIPRPPLGTVLIDAPEFLSLMNESNPSDGVNDGIFDLKINQNDSAAILYSSGTTGRVKGVLISHRNLITAITGLQVLDKTLVDGEIEPHPVALCLLPLFHVFGFFMLFRSISEGNTLVLMRKFDFEKMLRAVEKYRVTYIPVSPPLIVAMAKSELAAKYDLSSLQILGCGGAPLGKEVIDKFHVKFPNVEIIQGYGLTESSGGAAKTVGPEECSTAGSVGRLSENMEAKIVDPSSGEALPPGHKGELWIRGPGIMKGYVGDERATAETLHPEGWLKTGDLCYFDSDGLLYIVDRLKELIKYKAYQVPPAELEHLLQSHPEILDAAVIPYPDEDAGQIPLAYVVRQPGSNINEAQVMDLIAKQVAPYKKIRKVSFVNVIPKSSLGKILRKELVKHALSQGSNKL* 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5879598 5888810 - CsaV3_1G009470.1 Csa01g00947 515444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00947 553 Pfam AMP-binding enzyme 51 451 IPR000873 -
Csa01g00947 553 SUPERFAMILY Acetyl-CoA synthetase-like 51 548 - -
Csa01g00947 553 Gene3D - 447 548 IPR045851 -
Csa01g00947 553 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 26 543 - -
Csa01g00947 553 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Csa01g00947 553 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 26 543 - -
Csa01g00947 553 Gene3D - 33 446 IPR042099 -
Csa01g00947 553 CDD 4CL 42 541 - -
Csa01g00947 553 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00947 Csa-Chr1:5879598 Csa04g02685 Csa-Chr4:26054439 1.60E-169 dispersed
Csa04g01368 Csa-Chr4:13814305 Csa01g00947 Csa-Chr1:5879598 6.30E-21 dispersed
Csa01g00946 Csa-Chr1:5872757 Csa01g00947 Csa-Chr1:5879598 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00947 K01904 - csv:101211791 1052.35