Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g00958 | ATGGCGGTCTCATTTAGCGATGTCAAGTCGGCAGCTGGTCTCCAAAAGCTCGACGAGTACCTGCTCAGTCGTAGTTACATTTCTGGGTATCAAGCTTCGAAAGATGATATCGCTGTTTACGAAGCTCTCTCCAAGCCCGTTTCCAGCGAATATGTCAACGTATCTAGATGGTATAATCATATCGCAGCACTCGTGAGAGCCTCTGCTAGTTTTGGAGAGGGTTCTGGCGTTAAGTTCGACTCAGATGCAATCGCTACCCCACCGGCTGCCGATGCTAAGGCTAGTGCTGATGACGAGGATGATGACGACGATATGGATCTGTTTGGCGAAGAGACTGAAGAGGAGAAGAAGGCTGCTGAGGAGCGTGCAGCTGCCGTCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGAAAATCATCAGTTTTGATGGATATCAAGCCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGCGTTCAGATGGAGGGATTGCTTTGGGGAGCATCCAAACTCGTCCCTGTTGGATATGGTATTAAGAAACTACAGATAATGCTCACAATTGTTGATGACCTTGTGTCGGTCGACAATCTCATTGAGGAATACTTGACAGTTGAACCCATTAACGAGCATGTTCAGAGTTGCGATATTGTTGCCTTCAACAAAATCTAA | 681 | 46.55 | MAVSFSDVKSAAGLQKLDEYLLSRSYISGYQASKDDIAVYEALSKPVSSEYVNVSRWYNHIAALVRASASFGEGSGVKFDSDAIATPPAADAKASADDEDDDDDMDLFGEETEEEKKAAEERAAAVKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEYLTVEPINEHVQSCDIVAFNKI* | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5938320 | 5940974 | - | CsaV3_1G009580.1 | Csa01g00958 | 515455 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g00958 | 226 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 101 | 109 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
Csa01g00958 | 226 | Pfam | EF-1 guanine nucleotide exchange domain | 139 | 226 | IPR014038 | GO:0003746|GO:0006414 | |
Csa01g00958 | 226 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 2. | 215 | 226 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
Csa01g00958 | 226 | Gene3D | - | 130 | 226 | IPR014717 | - | |
Csa01g00958 | 226 | CDD | EF1B | 135 | 226 | IPR014038 | GO:0003746|GO:0006414 | |
Csa01g00958 | 226 | SUPERFAMILY | eEF-1beta-like | 134 | 226 | IPR036219 | - | |
Csa01g00958 | 226 | SUPERFAMILY | GST C-terminal domain-like | 10 | 65 | IPR036282 | - | |
Csa01g00958 | 226 | SMART | EF1_GNE_2 | 137 | 226 | IPR014038 | GO:0003746|GO:0006414 | |
Csa01g00958 | 226 | PANTHER | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER | 1 | 226 | - | - | |
Csa01g00958 | 226 | Coils | Coil | 109 | 129 | - | - | |
Csa01g00958 | 226 | Gene3D | - | 2 | 73 | - | - | |
Csa01g00958 | 226 | PANTHER | ELONGATION FACTOR 1-DELTA 1-RELATED | 1 | 226 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00958 | Csa-Chr1:5938320 | Csa06g00242 | Csa-Chr6:1666846 | 2.36E-115 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g00958 | K03232 | - | csv:101215489 | 353.214 |