Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00958 ATGGCGGTCTCATTTAGCGATGTCAAGTCGGCAGCTGGTCTCCAAAAGCTCGACGAGTACCTGCTCAGTCGTAGTTACATTTCTGGGTATCAAGCTTCGAAAGATGATATCGCTGTTTACGAAGCTCTCTCCAAGCCCGTTTCCAGCGAATATGTCAACGTATCTAGATGGTATAATCATATCGCAGCACTCGTGAGAGCCTCTGCTAGTTTTGGAGAGGGTTCTGGCGTTAAGTTCGACTCAGATGCAATCGCTACCCCACCGGCTGCCGATGCTAAGGCTAGTGCTGATGACGAGGATGATGACGACGATATGGATCTGTTTGGCGAAGAGACTGAAGAGGAGAAGAAGGCTGCTGAGGAGCGTGCAGCTGCCGTCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGAAAATCATCAGTTTTGATGGATATCAAGCCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGCGTTCAGATGGAGGGATTGCTTTGGGGAGCATCCAAACTCGTCCCTGTTGGATATGGTATTAAGAAACTACAGATAATGCTCACAATTGTTGATGACCTTGTGTCGGTCGACAATCTCATTGAGGAATACTTGACAGTTGAACCCATTAACGAGCATGTTCAGAGTTGCGATATTGTTGCCTTCAACAAAATCTAA 681 46.55 MAVSFSDVKSAAGLQKLDEYLLSRSYISGYQASKDDIAVYEALSKPVSSEYVNVSRWYNHIAALVRASASFGEGSGVKFDSDAIATPPAADAKASADDEDDDDDMDLFGEETEEEKKAAEERAAAVKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEYLTVEPINEHVQSCDIVAFNKI* 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5938320 5940974 - CsaV3_1G009580.1 Csa01g00958 515455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00958 226 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 101 109 IPR001326 GO:0003746|GO:0005853|GO:0006414
Csa01g00958 226 Pfam EF-1 guanine nucleotide exchange domain 139 226 IPR014038 GO:0003746|GO:0006414
Csa01g00958 226 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 215 226 IPR001326 GO:0003746|GO:0005853|GO:0006414
Csa01g00958 226 Gene3D - 130 226 IPR014717 -
Csa01g00958 226 CDD EF1B 135 226 IPR014038 GO:0003746|GO:0006414
Csa01g00958 226 SUPERFAMILY eEF-1beta-like 134 226 IPR036219 -
Csa01g00958 226 SUPERFAMILY GST C-terminal domain-like 10 65 IPR036282 -
Csa01g00958 226 SMART EF1_GNE_2 137 226 IPR014038 GO:0003746|GO:0006414
Csa01g00958 226 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 226 - -
Csa01g00958 226 Coils Coil 109 129 - -
Csa01g00958 226 Gene3D - 2 73 - -
Csa01g00958 226 PANTHER ELONGATION FACTOR 1-DELTA 1-RELATED 1 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00958 Csa-Chr1:5938320 Csa06g00242 Csa-Chr6:1666846 2.36E-115 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00958 K03232 - csv:101215489 353.214