Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00959 ATGGTTTCAACGAGAAGAAGTGGATCTCTCTCTGGTAGCAATAGCAAAAGATCTTCATCTTCGGAGGATAATAAGCCAGCATCACCGAAGCGTCAAAAGGTGGAAAATGGGTGTGGTTCAGAGAAATCGATGCCGGCGGCGGAGAATTCTAAGGAATTATGTACACCGCCGACTGTGGATCCCGGTGAGCATGGACCTGGTGGTGGTCCGATCGCTGGAGTTGACGTGGGAGAAGGTGTTAGCTCTTTGAAGGAGGATGCTGCACCAGCGGCTGTTGCTGTTAACACTCCTACCGCCGAGGGAACTTCGCTGGTGGGGGATAAGCCGAGGAGTTCATTTTCTTCATGGAGTCACTATGCTGCGAAGCAGAATCCGAATTTTGAAACGACAACTCCTTGGTGTAGGCTTCTCTCACAGTTCGGTCAGAACTCCAATGTTGATATTTTCTCGTCAAATTTTACGATTGGTTCTAGTAGAGGTTGCAACTTTCCCTTGAAGGATCACAGAATTAGTGGGACACTTTGTAAGATCAAGCACACTCAGCGTGAGGGTAGTGCTGTAGCTGTGCTTGAAAGTATGGGAGGCAAGGGATCAGTGACGGTTAATGGGTTGACTGTCAAGAAAAGCTCCAACTGTGTGCTAAATTCTGGTGACGAGGTGGTCTTCGGTGCTTTGGGGAACCATGCTTACATATTTCAGCAACTTATGAATGAGGTTTCAGTTAAAGGTTTAGATGTTCAGGGTGGTGTTGGAAAATTCTTGCAGCTTGGAAAGAGGACCGGTGATCCTTCTGCTGTGGCTGGGGCCTCGATCTTGGCATCACTTTCAAGCCTCAGACAGGATATATCACGTTGGAAGCCTCCTTCTCAGACCAGCAGTAAACCACACCAAGAAGTACGAAATGATAAAGCTGCAGACTCAAGCACAACTAACAGGAATCTTCATCCTGGCTCCAATCCAGACGCTGTCATAGAGGCAGGCAATGTAATGGAAGAAAGAAACCAGTGGATTGGGGAGTTGCAGCCAGCATCAACTTCGGGAATGTCTTTGCGGTGTGCAGCATTTAAAGAAGATGTTCATGCGGGGATTGTTGATGGAAGAGACTTAGAAGTTTCATTTGACAACTTTCCATACTATTTGAGTGAGAATACGAAGAATGTGCTTATTGCTGCTTCTTTCATACACTTAAAGTATAAAGATCATTCGAAGTATACCTCAGAATTAAATACAGTGAACCCACGAATTTTACTTTCTGGTCCTGCTGGTTCAGAGATCTATCAAGAGATGCTAGCAAAGGCACTTGCCAACTACTATGGTGCTAAGCTACTCATATTTGATAGCCATTCATTTTTGGGTGGTTTATCATCAAAGGAAGCAGAGCTGTTGAAGGATGGAATTAATGCTGCAAAGTCTTGTAGCTGTTCTAAACAGAGTATGGTATCTACTGAGACCACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACACCAAGCTCTTCAAATGCTACTTTGTTCACCCCCGATTCTCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTGGGACAGCAAAGAATAATTTTTTAAAAATTGGTGATAGAGTAAGATTTATAGGTTCAGCTTCTGGGGGGATATATCCTACAACATCTCCTTCAAGGGGCCCACCCAATGGAACTCGTGGAAAGGTTGTATTAACTTTTGACAACAACTCTTCGTCAAAAATTGGTGTTAAGTTTGATAAACTTATACCTGATGGAGTTGATCTTGGGGGATATTGTGAAGGAGGCTATGGATATTTCTGTAATGCAACCGATCTTCGTTTGGAGAACTCTGGCGTGGAAGAATTGGATAAGATACTTATTGACATTTTATTTGAGGCAGTATTTAGTGAAAGCAGAAATTCTCCTTTCATTTTGTTCATGAAAGATGCTGAGAAGTCTCTTGTTGGAAATTTAGACTCCTATTCTACTTTTAAAAGTAGACTGGAGAAACTTCCCGACAATGTTATAGTAATTGGCTCTCATACTCATACCGACAACCGCAAGGAGAAGTCGCATCCTGGTGGCCTGCTTTTCACAAAATTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCATTTCCAGATAGTTTTGGAAGACTACATGACAGAGGGAAGGAAGTTCCAAAAGCAACAAAACTTCTTACTAAACTATTTCCAAATAAAGTTACAATCCACATGCCGCAGGATGAGGGCCTTCTTGTATCATGGAAGCACCAGTTAGAACGAGATTCTGAAACTCTTAAAATGAAGGGAAATCTTAATCAATTGCGCGTTGTTTTGAGTAGGAGTGGAATGGATTGTGAAGGTTTAGAGACTTTATGCATCAAAGATCAAACACTTACGAATGAGAGTGCGGAGAAGGTAGTTGGATGGGCCTTAAGCCATCATTTAATGCAGAATCTAGAAGCCGATCCTGATTCTAGAGTACTTTTGTCTAGTGAGAGCATTCAATACGGGATCAGTATCTTACAGGCTATCCAGAATGAATCTAAGAGCTTGAAGAAGTCGCTTAAGGATGTTGTTACAGAGAATGAATTTGAGAAAAGGCTTTTAGCAGACGTTATCCCACCTAGTGATATAGGAGTCACATTTGATGATATTGGAGCTCTTGAAAATGTGAAGGATACTCTAAAGGAATTGGTGATGCTTCCTTTACAAAGGCCCGAACTTTTTTGCAAGGGGCAATTGACTAAGCCATGCAAAGGCATTCTGTTATTTGGCCCACCTGGAACAGGTAAGACGATGCTCGCAAAAGCCGTTGCTACTGAAGCTGGTGCAAATTTTATCAACATTTCCATGTCAAGCATTACATCAAAGTGGTTTGGTGAGGGTGAGAAGTATGTAAAAGCTGTTTTCTCTCTAGCCAGTAAAATTGCCCCAAGTGTTGTATTTGTTGATGAAGTTGACAGCATGTTGGGTCGAAGAGAAAATCCAGGAGAACACGAGGCCATGCGAAAGATGAAAAATGAATTTATGGTGAACTGGGATGGTTTGCGGACAAAGGACACAGAAAGGGTTCTGGTTCTTGCAGCCACAAACAGACCTTTTGACCTTGATGAAGCTGTTATTCGAAGGCTTCCTCGTAGGTTGATGGTGAATTTGCCAGACGCTCCAAATAGAGCAAAGATACTTAAAGTTATTTTGGCCAAAGAAGATTTGTCTCCAGAATTTGATTTTGATTCGGTTGCTAGTATGACAGATGGATACTCTGGGAGTGACCTTAAGAATCTTTGTGTTGCTGCTGCTCACCGTCCAATTAAAGAGATATTGGAGAAGGAAAAAAAGGAGCGTGCTGCAGCACTCGCAGACAGCCGGCCTGTTCCAGCCCTTAGTGGAAGTGAGGATATTCGGCCTCTAAATATGGATGACTTTAAATATGCTCATGAACGGGTATGCGCTAGTGTTTCGTCGGAGTCCGTAAACATGACCGAGTTGCTACAATGGAACGAGCTCTACGGTGAAGGGGGTTCTAGGCGAAAGAAGGCTCTAAGTTACTTCATGTAA 3552 42.99 MVSTRRSGSLSGSNSKRSSSSEDNKPASPKRQKVENGCGSEKSMPAAENSKELCTPPTVDPGEHGPGGGPIAGVDVGEGVSSLKEDAAPAAVAVNTPTAEGTSLVGDKPRSSFSSWSHYAAKQNPNFETTTPWCRLLSQFGQNSNVDIFSSNFTIGSSRGCNFPLKDHRISGTLCKIKHTQREGSAVAVLESMGGKGSVTVNGLTVKKSSNCVLNSGDEVVFGALGNHAYIFQQLMNEVSVKGLDVQGGVGKFLQLGKRTGDPSAVAGASILASLSSLRQDISRWKPPSQTSSKPHQEVRNDKAADSSTTNRNLHPGSNPDAVIEAGNVMEERNQWIGELQPASTSGMSLRCAAFKEDVHAGIVDGRDLEVSFDNFPYYLSENTKNVLIAASFIHLKYKDHSKYTSELNTVNPRILLSGPAGSEIYQEMLAKALANYYGAKLLIFDSHSFLGGLSSKEAELLKDGINAAKSCSCSKQSMVSTETTKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNFLKIGDRVRFIGSASGGIYPTTSPSRGPPNGTRGKVVLTFDNNSSSKIGVKFDKLIPDGVDLGGYCEGGYGYFCNATDLRLENSGVEELDKILIDILFEAVFSESRNSPFILFMKDAEKSLVGNLDSYSTFKSRLEKLPDNVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKATKLLTKLFPNKVTIHMPQDEGLLVSWKHQLERDSETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRVLLSSESIQYGISILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPEFDFDSVASMTDGYSGSDLKNLCVAAAHRPIKEILEKEKKERAAALADSRPVPALSGSEDIRPLNMDDFKYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFM* 1184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5941976 5955452 - CsaV3_1G009590.1 Csa01g00959 515456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00959 1183 CDD AAA 917 1050 - -
Csa01g00959 1183 Pfam ATPase family associated with various cellular activities (AAA) 919 1048 IPR003959 GO:0005524|GO:0016887
Csa01g00959 1183 Gene3D - 132 241 - -
Csa01g00959 1183 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 79 1183 - -
Csa01g00959 1183 ProSitePatterns AAA-protein family signature. 1022 1041 IPR003960 GO:0005524|GO:0016887
Csa01g00959 1183 SMART AAA_5 915 1052 IPR003593 -
Csa01g00959 1183 Gene3D - 1051 1145 - -
Csa01g00959 1183 MobiDBLite consensus disorder prediction 94 114 - -
Csa01g00959 1183 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 79 1183 - -
Csa01g00959 1183 MobiDBLite consensus disorder prediction 283 322 - -
Csa01g00959 1183 Coils Coil 839 859 - -
Csa01g00959 1183 MobiDBLite consensus disorder prediction 1 77 - -
Csa01g00959 1183 MobiDBLite consensus disorder prediction 477 523 - -
Csa01g00959 1183 SUPERFAMILY SMAD/FHA domain 132 230 IPR008984 GO:0005515
Csa01g00959 1183 Pfam AAA+ lid domain 1073 1107 IPR041569 -
Csa01g00959 1183 CDD FHA 150 233 IPR000253 GO:0005515
Csa01g00959 1183 MobiDBLite consensus disorder prediction 1 22 - -
Csa01g00959 1183 Pfam FHA domain 154 223 IPR000253 GO:0005515
Csa01g00959 1183 MobiDBLite consensus disorder prediction 96 114 - -
Csa01g00959 1183 Gene3D - 877 1158 IPR027417 -
Csa01g00959 1183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 878 1159 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00959 - - - csv:101214766 2205.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00959 Csa-Chr1:5941976 Csa07g01824 Csa-Chr7:18428229 0 dispersed
Csa07g02202 Csa-Chr7:20722928 Csa01g00959 Csa-Chr1:5941976 2.20E-61 dispersed
Csa01g00959 Csa-Chr1:5941976 Csa04g00619 Csa-Chr4:4100956 2.90E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g126 . . Bda06g00733 . Bpe12g00487 . . . Cmo13g00832 . . . . . . Cpe20g00310 . . . . . . . . . . . . . . . Cone2ag0968 . . Cone19ag0203 Lsi02g00499 Csa01g00959 . . . Blo15g00077 . . Bpe07g00884 . . . . . . Cma13g00801 . Car13g00649 Car18g00225 . . Bhi08g01473 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002923 2 8 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 4 2 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00959 Csa_Chr01 FPKM 4.975532 6.253689 5.759639 6.398563 5.586457 5.775891 5.433182 6.414727 5.456941 5.439083