Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00963 ATGGCTACGGCTCAGCAGATATTGAATAGCCTTAATACTCCTAAGGATGTTCGAGACGATATGCTTTTGATCTTCTCTAGTTTTGATAATCGTCTTTCTAATATCACCAGTTTGGTCAACAGTGGGGATTCGAAGAAAGAGGAGGATCGATTCGAAGCTGCTGAGAAGGTGATTCTTCGTTGGGATTCTGGTCATGGAGCTTCTCGGAACTCAATTAATTGGGAAGACTCGCCTGATGAGGCGGCTGAGTACTTAACTGCGGTTGATGATATTATTCAGTGGATCGACGACTTGTCGATTCGTTCGGATTCTGCTGAGATCGTCGACCGTGCTGAGAACGCGATCCAGATCGCTATGTCGAGGCTTGAGGATGAGTTTCGTCATATGTTGATTCGGAGCACCGTTCCTCTCGATGCTGACCATCTCTACGGTTCAATTCGTAAGGTTTCCCTTTCTTTTGCTTCACACGACAGCGAAAAATCCGATGAATTTGAGTCGTTTGCTGATACTCACCGTGGTTCCGGTATCTATCATGAGCGTGGTGTCAGTTTGGGAGATGATTTGAGGGTTGATTTGATCCATCCTGACGCCGTTGTTGATTTGAAGGAGATCGCCGACCGGATGATTCGTTCTGGATACGAGAAAGAGTGTGTTAATGTGTATACTGGTGTTCGTCGGGATGCTTTAGATGAGTGCTTGGTGGTTCTTGGAGTTGAAAAGCTAAGTATTGAGGATGTTCAGAAAATTGATTGGAAAGTCTTAGACGAGAAGATGAAGAAATGGATCCAAGCTGTTAAGGTTAGTGTTCGAGTACTTTTGACGGGGGAGAAGCGATTGTCTGACTATATCTTTAGTGGGTCCGATGATTCTGAAGAAGTTTGCTTCAATGAGACTGCAAAAGGGTGCATCAGACAATTATTGAATTTTGCTGAAGCCATTGCTATAGGGGAAAGGTCAGTGGAGAAGCTATTCCGTATTCTAGATATGTATGAAGCTCTGGAATACGTTTTCCCAGAATTGCAGGCTATGGTCACTGATGAATTTGTGATTGAGGAGGCGCGAGGAGTACTTTCTAGGTTGGGAGAGGCCGCCAAAGGTACATTTGTTGAATTTGAGAATGCTGTTCGGAGTGAAACTTCCAAGAAAACAATGTTAAATGCTGAGATTCACCCGCTTACTCGTTATGTCATGAATTACTTAACATTGGTTGTGGTTTATAGTAAGACTCTTGATGCACTCTTAGAAGGTGATGATGAGGATTTGCATCATCTAGGGGTTGATGGTGCTGACAATTTGGAGTTAGAAACTATGTCGCCTCTAGGTCGTCGTTTGTTTTCATTGATAGCAAACCTGGAGACCAATCTAGAGAGAAAATCCAAACTCTATGGTGATGATTCAATACAATATATATTCCTCATGAACAATATACAATATATTGTGCAAAAAGTAAAAGATTCTGAGCTTGGAAAGCTCTTGGGTGACCGCTGGGTACGTAAGCGCCGAGGCCAGGTTCGCATATATGCAACAAACTATCTTAGGGCGTCTTGGGGAAAATTATTATCCTTTTTGAAGGAAGAAGGAACTGGTGGAAGCTCCAACAGTGCCCTGAAACTAGCTACTTTAAAGGAAAAATTCAAAAATTTCAATGCTGGCTTTGAGGAAATCTATAGAGTTCAGACAGGTTGGAAGGTTCCAGATGCTCAACTACGAGAAGAGCTCCGAATTTCAGTGTCCGCAAAAGCTCTACCTGCCTATCGTGCCTTCTTGGGAAGACATGGAAGTCAGTTAGAGAATACAAGACATGCTGGGAGGTATATAAAGTACACATCAGATGACTTGGAAGGCTATCTATTGGATTTGTTTGAAGGATCATCTTGTGTTATACATCACTTACGAAGAAAAAGTAGTTCATAG 1914 42.63 MATAQQILNSLNTPKDVRDDMLLIFSSFDNRLSNITSLVNSGDSKKEEDRFEAAEKVILRWDSGHGASRNSINWEDSPDEAAEYLTAVDDIIQWIDDLSIRSDSAEIVDRAENAIQIAMSRLEDEFRHMLIRSTVPLDADHLYGSIRKVSLSFASHDSEKSDEFESFADTHRGSGIYHERGVSLGDDLRVDLIHPDAVVDLKEIADRMIRSGYEKECVNVYTGVRRDALDECLVVLGVEKLSIEDVQKIDWKVLDEKMKKWIQAVKVSVRVLLTGEKRLSDYIFSGSDDSEEVCFNETAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYEALEYVFPELQAMVTDEFVIEEARGVLSRLGEAAKGTFVEFENAVRSETSKKTMLNAEIHPLTRYVMNYLTLVVVYSKTLDALLEGDDEDLHHLGVDGADNLELETMSPLGRRLFSLIANLETNLERKSKLYGDDSIQYIFLMNNIQYIVQKVKDSELGKLLGDRWVRKRRGQVRIYATNYLRASWGKLLSFLKEEGTGGSSNSALKLATLKEKFKNFNAGFEEIYRVQTGWKVPDAQLREELRISVSAKALPAYRAFLGRHGSQLENTRHAGRYIKYTSDDLEGYLLDLFEGSSCVIHHLRRKSSS* 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5967014 5970486 - CsaV3_1G009630.1 Csa01g00963 515460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00963 637 SUPERFAMILY Cullin repeat-like 51 622 IPR016159 -
Csa01g00963 637 Pfam Exo70 exocyst complex subunit 259 618 IPR046364 GO:0000145|GO:0005546|GO:0006887
Csa01g00963 637 PANTHER EXOCYST COMPLEX PROTEIN EXO70 34 635 IPR004140 GO:0000145|GO:0006887
Csa01g00963 637 Gene3D Exocyst complex component Exo70 67 627 - -
Csa01g00963 637 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 34 635 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00963 Csa-Chr1:5967014 Csa01g03408 Csa-Chr1:30935673 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00963 K07195 - csv:101212753 1241.1