Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00980 ATGGGTCTTACAAAGATCGAAACATCATCTTCATCAAAATCCAACCATTCCCCTGTAAATAATATAATCATCAACATCCTCCTCCTCTGCTGCTTTCTCACAGCTCTCTTATGGATCCTTCCTTCTTCATCTCTCTTTCATCCCTCCAATTACCCAATAAACTTTCCCACGCCCACTTTCGTTTTCATCCTTGGCAATCTCATCGTCGTCCTTCTCATCGGAGAATCCAAGGTTTTTTCATCAACAACTCCGGACCCTTTCGGGTTTGATATTTGCTTTTACGATGGGAGTTTTCGAGAGACTTTGGTTAGTGAAGGGGATCACAAGAGGACTTCTGAGAGCTTTGATGAGGAGGATGAGTGGGAAATTGAATCGGTTAATTCGGAGGAATTGAGTAAAAGGGCTGATGATTTTATTGCCAGAGTTAATATGCAGAGGAAGATTGAAGCTATGATGAGGAGTAAATTAGGAATGGAGTTGATTAAAAGCTTCTTGAATTTAGTTTCTCCACCCATTACTTTCGTCTCTCTCGGATTCTTCTTACCGCCTTATGTGGTTCTTAAGTATTTCCTCTATTTGGTTAGAGGTATTTTTACCGAAGATGTCGCCGGAAAAGTAGTTCTCATAACCGGCGCTTCCTCCGGCATCGGCGAGCATTTAGCATATCAGTACGCACAGAGAGGAGCTCGATTAGCTCTTGTAGATAGACGAAAGAGCCCACTTCATGAAGTTGCTGATATAGCTCGCTACTATGGCTCCCCTGATGTTATCACCATTCCAGCCGACGTTTCCAAACTCCAAGATTCTCGACGAATCATCTACGACACGATTAATCACTTCGGCCGACGACACGAATTACTGGGGGTCGGTTTATACAACCCAATTTGCGATTCCGTATTTGAGGAACAACAGAGGGAAGATCATAGTCCTTTCTTCAACCGCGGCGTGGTTGCCGGCTCCAAGAATGAGCATTTACAATGCAAGTTCTTGTCGTCTCTCTCTATTTTATGGGCAACAAAGGCTGCACTTAAAAGCATGTTCGAAACATTGAGAGTGGAATTAGCTCCTGATATTGGGATCACAATTGTAACACCCGGGTTTGTTGAGTCTGAATTAACTAAAGGAAAGGCCTTGTATTCTCATGGTGCAATGGAAGTTCATCAAGATGTTAGAGATGCCATTGTGAGAAGTGTGTGTCGTGGTGACCGGTACTTGACGGAGCCATCTTGGTACAATAGTGTGTATTACCTGAAAGTGTTTTGCCCGGAGGTGTTGGAGTGGTGTTATCGTATATTTATGTATACGAGGCCGGGATCCTCTGTCGCGGAGGCGCCGAGCAAGAAGTTGCTGGATGCCACCGGAGCCAAGAATGTAATGTACCCACCTTCCATACACTCTGCTGAAATCGAGGACGACTAG 1419 44.4 MGLTKIETSSSSKSNHSPVNNIIINILLLCCFLTALLWILPSSSLFHPSNYPINFPTPTFVFILGNLIVVLLIGESKVFSSTTPDPFGFDICFYDGSFRETLVSEGDHKRTSESFDEEDEWEIESVNSEELSKRADDFIARVNMQRKIEAMMRSKLGMELIKSFLNLVSPPITFVSLGFFLPPYVVLKYFLYLVRGIFTEDVAGKVVLITGASSGIGEHLAYQYAQRGARLALVDRRKSPLHEVADIARYYGSPDVITIPADVSKLQDSRRIIYDTINHFGRRHELLGVGLYNPICDSVFEEQQREDHSPFFNRGVVAGSKNEHLQCKFLSSLSILWATKAALKSMFETLRVELAPDIGITIVTPGFVESELTKGKALYSHGAMEVHQDVRDAIVRSVCRGDRYLTEPSWYNSVYYLKVFCPEVLEWCYRIFMYTRPGSSVAEAPSKKLLDATGAKNVMYPPSIHSAEIEDD* 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6082302 6084932 + CsaV3_1G009800.1 Csa01g00980 515477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00980 472 PANTHER RETINOL DEHYDROGENASE-RELATED 331 464 - -
Csa01g00980 472 PRINTS Glucose/ribitol dehydrogenase family signature 206 223 IPR002347 -
Csa01g00980 472 PRINTS Glucose/ribitol dehydrogenase family signature 336 355 IPR002347 -
Csa01g00980 472 PRINTS Glucose/ribitol dehydrogenase family signature 356 373 IPR002347 -
Csa01g00980 472 Pfam short chain dehydrogenase 205 282 IPR002347 -
Csa01g00980 472 Gene3D - 316 435 - -
Csa01g00980 472 Gene3D - 195 293 - -
Csa01g00980 472 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 200 434 IPR036291 -
Csa01g00980 472 PANTHER RETINOL DEHYDROGENASE-RELATED 158 288 - -
Csa01g00980 472 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 331 464 - -
Csa01g00980 472 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 158 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00980 K22418 HSD1; 11beta/17beta-hydroxysteroid dehydrogenase [EC:1.1.1.146 1.1.1.-] - csv:101219132 499.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00980 Csa-Chr1:6082302 Csa01g00982 Csa-Chr1:6088971 1.25E-64 dispersed
Csa01g00980 Csa-Chr1:6082302 Csa01g00981 Csa-Chr1:6086469 4.70E-113 tandem
Csa05g03198 Csa-Chr5:31639519 Csa01g00980 Csa-Chr1:6082302 2.99E-51 transposed
Csa01g00980 Csa-Chr1:6082302 Csa06g00806 Csa-Chr6:6472487 4.57E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g78 . . . . . . . . Cmo13g00851 Cmo18g00230 . . . . . Cpe20g00296 . . . . . . . . . . . . . . . . . . . Lsi02g00518 Csa01g00980 Chy12g01152 Cme12g01573 . . . . . . Bma03g01242 . Sed08g2421 . . Cma13g00820 Cma18g00306 Car13g00664 Car18g00241 . . Bhi08g01520 Tan05g2993 Cmetu12g1667 Lac10g0600 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000732 2 6 3 2 1 3 2 3 3 3 1 3 4 4 4 4 3 1 2 3 3 5 4 4 3 3 4 2 4 4 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00980 Csa_Chr01 FPKM 26.132587 27.791132 39.068005 40.224129 2.56754 2.427029 3.796471 0.152095 0.0 0.169358