Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00981 ATGAATCTTATTCACAGCTTTCTTAATTTAGTCTCTCCACCCTTTACTTTTATCTCCCTTTTCCTTTTACTTCCGCCTTATCAAGCTCTCAAATCCTTCCTCTCTTTACTTGGTGTTCTCTTCACTGAAAATGTCCATGGAAAAGTCGTTCTCATCACCGGCGCTTCCTCCGGTATCGGCGAGCATTTGGCGTACGAGTATGCAAAACGAGGAGCTTGCTTAGTACTTGTAGCAAGACGACAGAATCTACTTGAAGAAGTTGCAGATATAGCTCGCTATTATGGATCACCAGGTGTAATCACCATTAAAGCAGATGTTTCCAAGTTTGAAGATTGCAGACGAGTCATTAACGAGACAATGAATAACTTTGGGAGATTGGATCATTTGGTGAACAATGCGGCGATAACCCATTTGGTGTTGTTTGAAGACATAGCCGATATTGCTGCGTTCAAGCAAGTAATGGATATAAATTACTGGGGAGCAGTATACATGACCCATTTGGCAATTCCTTATTTAAGATATAGCAGAGGGAAGATCGTGGCGTTGTCGGCTCCACCAGCGTGGCTACCGTCGCCGAGAATGAGTATTTACAATTCGAGCAAGGCGGCGATTAAGAGTATGTTTGAGACACTGAGAGTGGAGCTGGCGCCGGAGATCGGTGTGACGATTGTAACTCCAGGGTTCGTTGAATCAGAATTGACTCAAGGAAAAGCTTTGAACGCTTTTGGGAAAGTCGAACTTCGTCAGGATATGAGGGATGCATTGATCGGAATTGTACCGGTGGAGACGGCGGATGAATGCGCGAAGGGGGTGGTGAGAGGGGTATGCAGAGGATATAGGTACGTGACGGAGCCGTCGTGGTACAAAGTGCTGTTTTACTGGAAGGCGTTTTGCCCAGAGTTGATCGAGTGGTGCTACCGTATAATGTCGATGCCGGCGCCGGGAGGTTCAGAATCGGACGCCCTGAGCAAGCAGGCGTTGGATTATACGGGTGGAAAGTATATGCTGTATCCATCTTCAATTCGGTCTACGGAGCTGAAGGGAGACTGA 1050 46.67 MNLIHSFLNLVSPPFTFISLFLLLPPYQALKSFLSLLGVLFTENVHGKVVLITGASSGIGEHLAYEYAKRGACLVLVARRQNLLEEVADIARYYGSPGVITIKADVSKFEDCRRVINETMNNFGRLDHLVNNAAITHLVLFEDIADIAAFKQVMDINYWGAVYMTHLAIPYLRYSRGKIVALSAPPAWLPSPRMSIYNSSKAAIKSMFETLRVELAPEIGVTIVTPGFVESELTQGKALNAFGKVELRQDMRDALIGIVPVETADECAKGVVRGVCRGYRYVTEPSWYKVLFYWKAFCPELIEWCYRIMSMPAPGGSESDALSKQALDYTGGKYMLYPSSIRSTELKGD* 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6086469 6087947 + CsaV3_1G009810.1 Csa01g00981 515478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00981 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 309 IPR036291 -
Csa01g00981 349 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Csa01g00981 349 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Csa01g00981 349 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Csa01g00981 349 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Csa01g00981 349 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Csa01g00981 349 PANTHER RETINOL DEHYDROGENASE-RELATED 1 341 - -
Csa01g00981 349 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Csa01g00981 349 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Csa01g00981 349 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Csa01g00981 349 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Csa01g00981 349 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 1 341 - -
Csa01g00981 349 Pfam short chain dehydrogenase 48 236 IPR002347 -
Csa01g00981 349 Gene3D - 39 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00981 K22418 HSD1; 11beta/17beta-hydroxysteroid dehydrogenase [EC:1.1.1.146 1.1.1.-] - csv:101220450 691.804
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00981 Csa-Chr1:6086469 Csa05g03198 Csa-Chr5:31639519 9.80E-95 dispersed
Csa03g01358 Csa-Chr3:10245268 Csa01g00981 Csa-Chr1:6086469 1.47E-13 dispersed
Csa01g00980 Csa-Chr1:6082302 Csa01g00981 Csa-Chr1:6086469 4.70E-113 tandem
Csa01g00981 Csa-Chr1:6086469 Csa01g00982 Csa-Chr1:6088971 3.73E-114 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g77 . . . . . . . . Cmo13g00852 Cmo18g00231 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0003 . . Lsi02g00519 Csa01g00981 Chy12g01151 Cme12g01572 . . . Bda14g01347 . Bpe15g00229 . . . . . Cma13g00821 Cma18g00304 . . Cpe09g00950 . Bhi08g01521 Tan05g2995 Cmetu12g0843 Lac10g0601 . . . Cla03g00370 Cam03g0390 Cec03g0376 Cco03g0391 Clacu03g0389 Cmu03g0994 Cre03g0686 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000732 2 6 3 2 1 3 2 3 3 3 1 3 4 4 4 4 3 1 2 3 3 5 4 4 3 3 4 2 4 4 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00981 Csa_Chr01 FPKM 9.550459 11.982749 8.935034 9.680575 12.616262 12.805954 12.782393 11.372749 10.096056 10.624741