Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00986 ATGGGTTGCGTTCTTGGCACACCAGCCGCCGACGCTCACCTCGGCCCATCAGGACCTACCCATCGCCGCCGCACCACCGATCACCTCTCTCATATCCACGCTGTTAACAAACACACAACTTCATTACAAAATCAGGGAGTTCGGCAGGACTTGGATTCCTGCTCTGTAGAGCGTCGGAGGCCTTCGCCGGGCCTTTGCCACAGGAATGAGCAAGGTTGGCCGTCTTGGCTACTGGCTGTCGCCGGCGAGGTTATCCAAGGATGGACGCCTCGTCGAGCTAATACGTTTGAGAAGCTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTACAAGGCGAGAGATCTTATTACGGGGAAAATTGTAGCTCTGAAGAAGGTTAGGTTTGATAATTTAGAACCGGAGAGTGTAAGGTTTATGGCCAGAGAGATTTTGGTTCTGAAACGCCTCGATCATCCCAATGTGCTTAAGCTTGAAGGCTTGGTTACTTCGAGAATGTCGTGTAGTCTTTACTTAGTCTTTGAGTATATGGAGCACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAGTTCACGGAGCCTCAGGTCAAGTGCTATATGAAGCAACTATTGTTGGGGCTTGAGCATTGTCACAACCGAGGTGTCTTGCATCGTGATATAAAGGGTTCCAATTTGCTAATTGATAACGAAGGAATACTGAAAATAGCTGATTTTGGGTTAGCTACTTTCTTTGATCCTGAACAGAACCAACATATGACTAGTCGAGTAGTAACCCTTTGGTACCGTCCTCCTGAATTATTACTTGGAGCGACTCTTTATGGTACAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTTGCTGGGAGGCCGATCATGCCAGGAAGGACAGAGGTTGAACAACTCCATAAGATATTTAAATTATGTGGTTCTCCATCTGAGGATTACTGGAAGAAGTACAAATTGCCAAATGCAACTCTATTTAAACCCCAACAACCATACAAACGCTGCATTGCAGAAACTTTAAAAGATTTTCCACCTTCTTCTCTACCTCTTATCGAATCTCTCCTTACAATGGACCCCGATGGGAGAGGTACTGCCACTGCTGCTCTGAATAGCGAATTCTTTACTACCGAGCCTCTTGCCTGTGAACCGTCAAGTCTACCTAAATACCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGCAAAGGGGTCTAAATGGGAAATCAACAGCTGTTGACGGTGGTGGAAGGAGAGTAAGAGGACGGGATCGGGTTGGTCGTGCTGTCCCAGCTCCTGAAGCTAATGCAGAGATACAAGCAAACTTAGATAGGTGGAGAAATGCGACAAATGCAAATGGTAAGAGCAAGAGTGAGAAGTTTCCTCCACCTCATCAAGATGGGGCCGTGGGATATCCGCCACACGAGACGTCCCAGAGGGGCCATCTATCATTTGGGGCAGCTGATACTTCATTCAGCTCCTCCATTTTTAGTTCAAAGTCAGGATCTGTTAAAAGTTCAGTAGCTGCCGGGGGACCTTCTCGGAGGAAGAAAGGAGATAAAGATAACTCCTCGATGTCTTCATCTCGAAAGTTCATCCGTGCATTGAAGCCATCAATCGGGTTATCAATGGATCTGTTGTTTAGGGGTAAATAA 1686 47.33 MGCVLGTPAADAHLGPSGPTHRRRTTDHLSHIHAVNKHTTSLQNQGVRQDLDSCSVERRRPSPGLCHRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLLGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPEQNQHMTSRVVTLWYRPPELLLGATLYGTGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWKKYKLPNATLFKPQQPYKRCIAETLKDFPPSSLPLIESLLTMDPDGRGTATAALNSEFFTTEPLACEPSSLPKYPPSKELDVKLRDEEARRQRGLNGKSTAVDGGGRRVRGRDRVGRAVPAPEANAEIQANLDRWRNATNANGKSKSEKFPPPHQDGAVGYPPHETSQRGHLSFGAADTSFSSSIFSSKSGSVKSSVAAGGPSRRKKGDKDNSSMSSSRKFIRALKPSIGLSMDLLFRGK* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6137843 6141959 - CsaV3_1G009860.1 Csa01g00986 515483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00986 561 Pfam Protein kinase domain 96 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00986 561 ProSiteProfiles Protein kinase domain profile. 96 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00986 561 MobiDBLite consensus disorder prediction 1 25 - -
Csa01g00986 561 Gene3D Transferase(Phosphotransferase) domain 1 179 419 - -
Csa01g00986 561 MobiDBLite consensus disorder prediction 409 493 - -
Csa01g00986 561 CDD STKc_CDK9_like 96 380 - -
Csa01g00986 561 PANTHER CELL DIVISION PROTEIN KINASE 54 533 - -
Csa01g00986 561 MobiDBLite consensus disorder prediction 453 467 - -
Csa01g00986 561 MobiDBLite consensus disorder prediction 506 541 - -
Csa01g00986 561 Gene3D Phosphorylase Kinase; domain 1 83 178 - -
Csa01g00986 561 SMART serkin_6 96 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g00986 561 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 54 533 - -
Csa01g00986 561 SUPERFAMILY Protein kinase-like (PK-like) 89 385 IPR011009 -
Csa01g00986 561 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Csa01g00986 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00986 Csa-Chr1:6137843 Csa03g01412 Csa-Chr3:10610724 0 dispersed
Csa01g00986 Csa-Chr1:6137843 Csa02g00346 Csa-Chr2:2385123 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77771 PF00069 Pkinase 5.10E-67 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00986 K08819 - csv:101205716 1093.57