Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00988 ATGGCAGCCTTTTCATATCAATACCAACCATTTCTTCTTGACTCTATTTTCTTGCACAATAACAATCCTCTTAAAATGGGAGGCTTTTTTGATGAACAGAATTTCAACACCAATTGTTTCTCCCCATTTTACCCTCAAGATCATCAACCACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAAGAACAACCCATTTACCATTTTCCTGACCTCTCTAAACAAAGCCCTGAATCTTCAACTTTGGTGGACCGGTCGGACAGCGCTGAGCTGCCGGTTGGAGATCAGTTGAAGCCGGCTGTTACTGTTACCGTCACTTCCCCTTGTAGTAAGAAAAGAAAGAGTCGGAATAATTCCTCCGCCTCCTCCGCCCAGTCCAAGGGGAGTAATGATCAGAGCAACGGGAAAAAGGCGAAAAATAAAGGAGAAGTAGAAGAAGGGAAAGAAAGAGATCAAAAGGCCAAAAGTGGGAAGAAATTATTGGAGGAGAAGTTAAAAGATTCAGAAGATGGAGGTGCAACCACCGGTTACATTCATGTCAGAGCAAGAAGGGGCCAAGCCACTGATAGCCACAGTCTTGCTGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACATTGCAACGCCTTGTTCCCGGTTGCGACAAGGTTACAGGGAAGGCCCTTATGTTGGATGAAATTATCAATTATGTTCAGTCTCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGACTTAGACGGTCTCATGATTCAACCAGAGACGACGTCGTTGAGTAGCATAACACCAACACTACCGGCGATGGCGCAATGCAGTGTCGTATCACAGCCGGCGTTGATCGACACGACGCCTCCGGCGACCCCATCTCCGGCAATCTCCACCGGGAATAATTTTCCCTTAATGGACCCTTCAGCTAATTTGTTTCTACTTCAACAAGGGATAAGCCCAAGTAACGGTTACTCCCAATCGTCACAGGATAACGTTAAAGTTTCATCATGGGATGTGGAAGACCAAAAAAGAAAGCAGCTTCTTATTTCATCAGGAATTGGCGACAACTTGTGTTACTTCCATTAA 1119 44.95 MAAFSYQYQPFLLDSIFLHNNNPLKMGGFFDEQNFNTNCFSPFYPQDHQPQQQQQQQQQQQQEQPIYHFPDLSKQSPESSTLVDRSDSAELPVGDQLKPAVTVTVTSPCSKKRKSRNNSSASSAQSKGSNDQSNGKKAKNKGEVEEGKERDQKAKSGKKLLEEKLKDSEDGGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPETTSLSSITPTLPAMAQCSVVSQPALIDTTPPATPSPAISTGNNFPLMDPSANLFLLQQGISPSNGYSQSSQDNVKVSSWDVEDQKRKQLLISSGIGDNLCYFH* 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6153304 6155828 - CsaV3_1G009880.1 Csa01g00988 515485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00988 372 MobiDBLite consensus disorder prediction 100 133 - -
Csa01g00988 372 Gene3D - 183 253 IPR036638 GO:0046983
Csa01g00988 372 MobiDBLite consensus disorder prediction 41 86 - -
Csa01g00988 372 SMART finulus 192 242 IPR011598 GO:0046983
Csa01g00988 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 236 IPR011598 GO:0046983
Csa01g00988 372 MobiDBLite consensus disorder prediction 41 157 - -
Csa01g00988 372 CDD bHLH_AtBPE_like 176 261 - -
Csa01g00988 372 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 372 IPR024097 GO:0006355
Csa01g00988 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 252 IPR036638 GO:0046983
Csa01g00988 372 Pfam Helix-loop-helix DNA-binding domain 190 237 IPR011598 GO:0046983
Csa01g00988 372 MobiDBLite consensus disorder prediction 134 157 - -
Csa01g00988 372 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 372 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g00988 Csa01g00019 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00988 Csa-Chr1:6153304 Csa07g01563 Csa-Chr7:16047841 8.89E-45 dispersed
Csa01g00019 Csa-Chr1:132006 Csa01g00988 Csa-Chr1:6153304 6.33E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30692 PF00010 HLH 7.40E-07 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00988 - - csv:101205943 671.774