Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00990 ATGCTTTCCAGAGTTGGGAACGTTCTTTGGATGGAAAATCGGGACGATGAAGACTCATCTTCCTGGACTAAAAACAACACCGACCACAATCATCTCAACCACCCTGTTAATTGCTCTGTTTTGAACAACAAAGACGAAATCACCTCCCTCTCTACCTTCAAATCCATGCTTGAGGTTGAAGATGACTGGTGTATCTCTGCTAATGCTCTCCATAACCATAACCACCACACCGACATCAATGACATTACCTTCTCTCAAAATTTCACCGACCCACCTGATAATTTGTTGCTCCCCCCTGGAGATTCCTCCTCTTCTTGTTCCCCTTCTTCTTCTGTGTTTAATAACATTGACCCATCTCAATTGCGTTTCTTCTTACCTCCAACTCGCACTTTGTCTTCACTTCATAAGGTAGTTTCTAACAACCCTTTAGACCATGGCTTCGATTTGGGAGCAGAGGTTGGGTTTCTTGACGTCCAAGCTTCAAATGCTTCGACTCTGCTCAACGATGGAGGTGGGTTATTAACTGGGTTCACTGATTTAAGCCCAACTAGTCAGATGAACACTCCTAGTTTGTGCTTAGGTTCTCAATTGACAGCACAAAACGTGGCCCCAATGAGTGATAATTGTTCGGGATTAGCTGGATTTCAGAGTTTTGATGAGAATTTGGGAAATGCTCTGCTTTTGAATCGGTCTAAGCTTTTGAGACCACTTGAATCTTTTCCCTCAGTGGGAGCTCAGCCGACTCTTTTCCAGAAGAGGGCTGCTCTAAGGAAGAGTTTAGCTGATAAGGGAAGCAGTTTGGGGGTTTTGAGCCCCGATGGCGGCTGGTTTTCAAATAGGATTGAAGGGGGGATTGGGAAAAATGAAATGGGTGAAGAAAATGGGAAGAAGAGGAAAATGGTTTATGCAGATGAATTGCAAGATACTAGCATCGATACATCCCGTTTCAATTACGATTCTGATGACTTTACCGAGAATACTAACACTAAATTGGATGAGAGTGGTAGAAATGTTGGAAATACATCTAACGCCAATAGTACAGTAACCGGCGGCGACCAGAAGGGGAAGAAAAAAGGACTTCCAGCGAAGAATTTAATGGCCGAGAGACGCCGGAGGAAGAAGCTCAATGATAGGCTGTACATGCTGAGGTCCGTTGTTCCAAAAATCAGCAAAATGGATAGAGCTTCAATTCTTGGAGATGCAATTGAGTACTTGAAGGAATTACTGCAAAGAATCAACGACCTCCATAATGAATTGGAGTTTTCTCCTTCTGGGGCAGCCTTGACGCCAGGTGCAAGCTTCCATCCCTTGACTCCAACACCACCAAGCCTCTCGAGTCGTATAAAGGAGGAGCTTTGTCCTACCTCATTTCCCAGCCCAAACGGCCAACCTGCAAGGGTCGAAGTTAGAGTACGAGAAGGACGTGCAGTAAATATACACATGTTTTGTGGCCGCCGACCGGGTCTCTTGCTCTCTACAGTTAGGGCATTAGATAATCTTGGACTGGATATCCAACAGGCTGTGATTAGCTGCTTTAATGGTTTTGCTATGGACATTTTTCGAGCAGAGCAATGCAGCGAAGGTCAAGATGTCCATCCTGAGCAAATAAAAGCAATATTATTGGATTCAGTTGGCTTCAATAGTGCCACATAA 1653 44.46 MLSRVGNVLWMENRDDEDSSSWTKNNTDHNHLNHPVNCSVLNNKDEITSLSTFKSMLEVEDDWCISANALHNHNHHTDINDITFSQNFTDPPDNLLLPPGDSSSSCSPSSSVFNNIDPSQLRFFLPPTRTLSSLHKVVSNNPLDHGFDLGAEVGFLDVQASNASTLLNDGGGLLTGFTDLSPTSQMNTPSLCLGSQLTAQNVAPMSDNCSGLAGFQSFDENLGNALLLNRSKLLRPLESFPSVGAQPTLFQKRAALRKSLADKGSSLGVLSPDGGWFSNRIEGGIGKNEMGEENGKKRKMVYADELQDTSIDTSRFNYDSDDFTENTNTKLDESGRNVGNTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFSPSGAALTPGASFHPLTPTPPSLSSRIKEELCPTSFPSPNGQPARVEVRVREGRAVNIHMFCGRRPGLLLSTVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDVHPEQIKAILLDSVGFNSAT* 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6174783 6178372 + CsaV3_1G009900.1 Csa01g00990 515487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00990 550 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 101 548 - -
Csa01g00990 550 CDD bHLH_AtAMS_like 362 426 - -
Csa01g00990 550 Gene3D - 353 422 IPR036638 GO:0046983
Csa01g00990 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 424 IPR036638 GO:0046983
Csa01g00990 550 CDD ACT_UUR-ACR-like 479 539 - -
Csa01g00990 550 MobiDBLite consensus disorder prediction 326 359 - -
Csa01g00990 550 Pfam Helix-loop-helix DNA-binding domain 366 408 IPR011598 GO:0046983
Csa01g00990 550 Coils Coil 398 418 - -
Csa01g00990 550 PANTHER BHLH TRANSCRIPTIONAL FACTOR 101 548 - -
Csa01g00990 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 408 IPR011598 GO:0046983
Csa01g00990 550 SMART finulus 365 414 IPR011598 GO:0046983
Csa01g00990 550 MobiDBLite consensus disorder prediction 326 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00990 Csa-Chr1:6174783 Csa03g02566 Csa-Chr3:24067204 1.31E-154 dispersed
Csa06g01239 Csa-Chr6:10430376 Csa01g00990 Csa-Chr1:6174783 3.17E-14 dispersed
Csa01g00990 Csa-Chr1:6174783 Csa02g02231 Csa-Chr2:20027274 4.11E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30693 PF00010 HLH 2.10E-09 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00990 - - csv:101206422 1015.37