Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00992 ATGGCGGAGCCTGCGGAAGACATCGATGGAATCACCAGCAAAGAAGAGCAAGAAGAGGCTTTGGTCGCTCTCATCGATCATCGTTGCCATGAAGTTCAAAATCTCAAGCACCGTGTCTCCTACTACACTTCACAGCTTGAGGAAGCGCAGAAGAGATTGCAGGATACAGAATCTAAATTGGCCCGGCTTCGTCGTCAGAGCAATGCAGTGTCATCCAAAGATTCTCTGAGAAGTAGAGCTGTGAGTGTGAAAGTGGAGCAAACGGTAAATGAAGGTAGCAGGCCCCAGCCAGTGTCGAAACCCGAGCTTGTGATTCCGGCTGTGGTTCCAAAGACTTCTCAGAACAGTGCATTGGCTGGAAATGGAGCGAAGGCTTCAAATAGCTCTAGGGCTCAATCAAGTCCTTCTCATATTAAGAATGTAGTTAAAGTTGAAGGGGACAAAAATATTGGCAACACTTCTCTTCGAGAAACTTCGAACACTCCTGATAGAGGAACAAAACGGAAGCTTGAACAGCAGTTCAAGGAGCATAAAGAGTTGATTCCATTAATACGTAGCAGCTCATCACCTTCTCAAATTCGCTGCGTTGGGAGCAATCACATCTCCAGTCAGCATAAGAGAAAGTTGAGAAGTCTCATCTCATGCCCTGTGAACGAACAGTTATTTGTGACCAGTGCCCTGGATGGAGTAGTCAACTTGTGGCAGTTACAGGCCAGAGGGTCAAGTGCCTCTCTTCTTAGTTCTGCGGACTGTGTATCTCCAAAACAAAGAAGATGGCCAGAAGATATGGCCTGGCATCCAGAGGGGAATCGTGTATTTCTTGTTTACAGTGCTGATGGTGGGGACTCTCAGGTCTCAATCATGAATCTGAACAAAAGTGAAGGGAAAGCTCGTGTTACTTTCCTTGAGGATAAACCGCATGTTAAGGGCATTATCAACAGCATAATTTTCTTGCCTTGGGATAGCACGTCTTTTATCACTGGTGGAAGTGATCATGCTGTCATACAATGGAAAGAGGGAGATGGAGATAAAAGATGGAAGCCAAAGGCATTGCACAGAAGCCTGCACTCGTCAGCAGTCATGGGAGTTGCAGGGATGCAGCAGAAGCCAATTGTACTTTCTGCAGGGGCGGACAAGAGAATACTTGGGTTTGACGTAAATGTTGGAAGAACTGAGTTCAGGCATCAGATAGAAAGCAAATGCATGAGTATATTACCTAATCCGTGCGATTTTAACCTATTTATGGTCCAAACAGGCACTCCAGGAAAGCAACTTCGGTTATATGATATCAGACTTAGGCAGACAGAACTACACGCCTTCGGGTGGGAGCAAAAGAGCAGTGAATCTCAGTCAGCATTGATAAATCAAGCTTGGTCTCCTGACGGTTTGATTCTTACATCTGGCTCTGCAGACCCTGTGATCCATCTATTTGATATCCGGTACAATCTGCACAAGCCTTCGCAATCCATAAGTGCTCATCACAAACGAGTCTTCAAGGCCGTATGGCTCGAATCACTCCCTCTTCTTATTTCCATATCTTCTGATCTCAACATTGGATTGCACAAAACAGCGTGA 1575 45.71 MAEPAEDIDGITSKEEQEEALVALIDHRCHEVQNLKHRVSYYTSQLEEAQKRLQDTESKLARLRRQSNAVSSKDSLRSRAVSVKVEQTVNEGSRPQPVSKPELVIPAVVPKTSQNSALAGNGAKASNSSRAQSSPSHIKNVVKVEGDKNIGNTSLRETSNTPDRGTKRKLEQQFKEHKELIPLIRSSSSPSQIRCVGSNHISSQHKRKLRSLISCPVNEQLFVTSALDGVVNLWQLQARGSSASLLSSADCVSPKQRRWPEDMAWHPEGNRVFLVYSADGGDSQVSIMNLNKSEGKARVTFLEDKPHVKGIINSIIFLPWDSTSFITGGSDHAVIQWKEGDGDKRWKPKALHRSLHSSAVMGVAGMQQKPIVLSAGADKRILGFDVNVGRTEFRHQIESKCMSILPNPCDFNLFMVQTGTPGKQLRLYDIRLRQTELHAFGWEQKSSESQSALINQAWSPDGLILTSGSADPVIHLFDIRYNLHKPSQSISAHHKRVFKAVWLESLPLLISISSDLNIGLHKTA* 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6181754 6188199 + CsaV3_1G009920.1 Csa01g00992 515489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00992 524 MobiDBLite consensus disorder prediction 64 95 - -
Csa01g00992 524 SMART WD40_4 347 385 IPR001680 GO:0005515
Csa01g00992 524 SMART WD40_4 483 522 IPR001680 GO:0005515
Csa01g00992 524 SMART WD40_4 192 235 IPR001680 GO:0005515
Csa01g00992 524 SMART WD40_4 440 478 IPR001680 GO:0005515
Csa01g00992 524 SMART WD40_4 295 338 IPR001680 GO:0005515
Csa01g00992 524 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 11 523 - -
Csa01g00992 524 MobiDBLite consensus disorder prediction 115 139 - -
Csa01g00992 524 Coils Coil 32 73 - -
Csa01g00992 524 SUPERFAMILY WD40 repeat-like 210 518 IPR036322 GO:0005515
Csa01g00992 524 MobiDBLite consensus disorder prediction 64 103 - -
Csa01g00992 524 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 11 523 - -
Csa01g00992 524 Gene3D - 348 524 IPR015943 GO:0005515
Csa01g00992 524 Gene3D - 179 347 IPR015943 GO:0005515
Csa01g00992 524 MobiDBLite consensus disorder prediction 115 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00992 - - - csv:101207060 1006.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g00992 Csa01g00007 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00007 Csa-Chr1:59513 Csa01g00992 Csa-Chr1:6181754 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g19 . . . Bda15g00699 Bpe12g00456 . . . . . . . . . . Cpe20g00288 . Bhi02g00609 . . . . . . . . . . . . . . . . . Lsi02g00529 Csa01g00992 Chy12g01142 Cme12g01560 . . . . . . . Bma08g00282 Sed01g1537 . . . . Car13g00674 . . . Bhi08g01542 Tan05g3013 Cmetu12g1640 Lac10g0615 Hepe07g2080 . . Cla03g00381 Cam03g0400 Cec03g0386 Cco03g0401 Clacu03g0399 Cmu03g1004 Cre03g0696 . Csa01g00007 Chy02g02707 Cme02g02115
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002709 1 5 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 2 2 2 2 2 3 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g00992 Csa_Chr01 FPKM 13.985177 12.582964 12.424742 14.695057 9.354774 9.915061 11.594821 14.982317 13.883498 13.437883