Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g00998 ATGAAATGGGGGGTTCTTCTTGTTCTTATTCTGGCCTCCGCCACCGCAGTGTCGTGGGCCGAGAAAGATTTTGAGGATGACGGAGAAGAATACCCGAGCCTTGAGATTCCGCAGTTGAAGGATTTTTCAGCTTTTGGGGACTTTCTTACTTATGGGTTCTACCAGAAAAGTTGCCCCGGCGTCGAAGGCATTATTCACCGTAAAGTCAAGCAGTGGTTCGATAAAGACAACACCATTGCCGCTGGCCTCTTGAGATTGCACTTTCATGACTGCGTCGTCAGGGGCTGCGATGGTTCTATTCTTCTGGATTACGAGGGAAGTGAGAGACGGGCTCCGGCGAGCAAGACACTTAGAGGTTTCGAAGTGATCGACGATATCAAAGCTGAGTTAGAGAAAAAGTGCCCGAAAACAGTTTCTTGCGCTGATATTTTAACCGCTGCTGCGAGAGAAGCGACGGTCCTCATGGGAGGGCCTTATTGGATGGTACCATATGGAAGAAGAGATGGAGTTGATTCCATTGCCAAAGAAACAGAATTAGTGCCAATGGGTATTGAAGACATCACTTCTCTCATTGAATTATACCAATCTCTTGGCTTGAATGTCCTCGATTTGGTCGTTCTTTCAGGGGCACACACAATCGGAAGGGCAACGTGTGGAGTGGTACAAGAAAGACTTTACAATTACAGCGCAACTGGAAAACCCGACCCATCATTGAATCCAAAATACTTAAACTTCTTGAGAAGGAAATGCCGATGGGCCACCGACTACGCGGACCTTGACGCTACAACTCCCAACAAATTCGACAACGCCTATTACTCCAATCTCCCAAAAAAGATGGGTCTTTTGTCCTCTGATGCCGCTCTCTATACCGATTCAAGAACTTCCCCTATTGTTAAAGCCTTGGCCTATCAGCCCTCCATTTTCCGCCACCAATTTGCTGTCTCCATGGCTAAGCTTGGGAACGTTCAAGTTCTTACTGACCTTTTCGAAGGCGAGATTCGAACCAAATGCAGTTGTAGGAATTCTCCTTGA 1032 47.09 MKWGVLLVLILASATAVSWAEKDFEDDGEEYPSLEIPQLKDFSAFGDFLTYGFYQKSCPGVEGIIHRKVKQWFDKDNTIAAGLLRLHFHDCVVRGCDGSILLDYEGSERRAPASKTLRGFEVIDDIKAELEKKCPKTVSCADILTAAAREATVLMGGPYWMVPYGRRDGVDSIAKETELVPMGIEDITSLIELYQSLGLNVLDLVVLSGAHTIGRATCGVVQERLYNYSATGKPDPSLNPKYLNFLRRKCRWATDYADLDATTPNKFDNAYYSNLPKKMGLLSSDAALYTDSRTSPIVKALAYQPSIFRHQFAVSMAKLGNVQVLTDLFEGEIRTKCSCRNSP* 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6211462 6213588 + CsaV3_1G009980.1 Csa01g00998 515495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g00998 343 PRINTS Haem peroxidase superfamily signature 80 94 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 PRINTS Haem peroxidase superfamily signature 138 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 PRINTS Haem peroxidase superfamily signature 156 168 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 PRINTS Haem peroxidase superfamily signature 203 218 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 PRINTS Haem peroxidase superfamily signature 260 275 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 PANTHER PEROXIDASE 38 339 - -
Csa01g00998 343 ProSitePatterns Peroxidases active site signature. 80 91 IPR019794 GO:0004601
Csa01g00998 343 PRINTS Plant peroxidase signature 58 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 PRINTS Plant peroxidase signature 82 102 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 PRINTS Plant peroxidase signature 118 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 PRINTS Plant peroxidase signature 137 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 PRINTS Plant peroxidase signature 156 171 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 PRINTS Plant peroxidase signature 202 214 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 PRINTS Plant peroxidase signature 258 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 PRINTS Plant peroxidase signature 274 291 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 PRINTS Plant peroxidase signature 314 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 SUPERFAMILY Heme-dependent peroxidases 49 341 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 ProSiteProfiles Plant heme peroxidase family profile. 48 341 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 PANTHER PEROXIDASE 25-RELATED 38 339 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 ProSitePatterns Peroxidases proximal heme-ligand signature. 203 213 IPR019793 -
Csa01g00998 343 Gene3D - 52 341 - -
Csa01g00998 343 Pfam Peroxidase 67 302 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g00998 343 CDD secretory_peroxidase 49 338 IPR033905 GO:0004601|GO:0042744
Csa01g00998 343 Gene3D Peroxidase, domain 2 181 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00998 Csa-Chr1:6211462 Csa06g01138 Csa-Chr6:9459660 8.76E-139 dispersed
Csa01g00998 Csa-Chr1:6211462 Csa06g02923 Csa-Chr6:25335342 8.03E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g00998 K00430 - csv:101208042 698.353