Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01001 ATGAGATTGTCCCACATATTCATCATATCTGATCAAACTAATTTTGTTGGTGAAAGTCAAAAGCTCCTCAATGACTCAATTCCCCTTCTTTATCCCAATCTAGTATACTTGAATCTACGAAACAACAAACTGTGGGGCCCTATACCCTCAACTATCAATGATTCCATGCCCAAGTTGTTTGAATTAGATTTGTCTAAGAATTACCTTATTAATGGTGCAATTCCGTCGTCCATTAAAACAATGAATCACCTTGGAGTATTGTTAATGTCAGACAACCAACTTTCAGGAGAGCTTTTTGATGATTGGAGTAGACTCAAATCAATGTTTGTTGTTGATTTAGCCAACAATAATCTACACGGAAAAATTCCAAGCACAATAGGTCTATCAACATCGCTCAATGTATTAAAGTTAGAGAACAACAATTTGCATGGAGAAATTCCGGAATCCTTGCAGAATTGTTCGCTACTCACGAGCATTGATCTTTCAGGAAATAGATTCTTAAACGGAAACTTGCCTTCATGGATAGGAGTAGTTGTGTCAGAGCTACGATTGTTAAACCTGCGGTCTAATAATTTCAGCGGAACCATTCCAAGACAATGGTGCAATCTTCTTTTTCTTCGTATATTTGATCTATCAAACAATCGTCTTGTTGGAGAAGTTCCAAGTTGTTTGTATAATTGGACATCTTTTGTCGAAGGCAACGATGACATTATTGGATTGGGATATTATCATGAGGGTAAGAAAACGTGGTATTACTCGTTCGAAGAAAAGACAAGATTGGTTATGAAAGGTATAGAGTCTGAATACTACAATAAAGTTCTCGAGCTTGTTCTGACAATAGATCTTTCAAGGAATGAATTGAGTGGTCAGATTCCAAATGAGATAACAAAGCTCATTCACTTGGTTACTCTAAACTTGTCTTGGAACGCTCTTGTGGGTACCATTTCAGAAAGCATTGGGGCCATGAAAACTTTAGAAACACTGGATCTCTCCCACAACCATCTTTCTGGAAGGATTCCCGATAGCCTAACATCTTTAAATTTCTTGACACATTTGAATATGTCATTCAACAATTTGACAGGAAGAATACCGACGGGTAATCAGCTTCAAACACTGGAAGACCCATGGATCTATGAAGGCAATCATTATCTATGTGGGCCTCCTCTAATTCGGATCAAGTGTCCAGGTGATGAGAGTTCAAGCAATCTACCAATTTCAACAAGTGAAGGAGAAGAAGATGGCAAAGAAAATGACTCGGCAATGGTTGGCTTCTATATCAGTATGGCAGTTGGTTTTCCATTTGGCATCAGCATACTGTTGTTTACCATTTGCACAAATGAAGCGAGGAGAATATTCTACTTTGGCATTGTGGATCGTGTCAATTATAACATACTCCAAACAATTGCCTTTCTTACAATTGGTCTGAGGAGAATGATTATATGGAGACGATGA 1452 37.95 MRLSHIFIISDQTNFVGESQKLLNDSIPLLYPNLVYLNLRNNKLWGPIPSTINDSMPKLFELDLSKNYLINGAIPSSIKTMNHLGVLLMSDNQLSGELFDDWSRLKSMFVVDLANNNLHGKIPSTIGLSTSLNVLKLENNNLHGEIPESLQNCSLLTSIDLSGNRFLNGNLPSWIGVVVSELRLLNLRSNNFSGTIPRQWCNLLFLRIFDLSNNRLVGEVPSCLYNWTSFVEGNDDIIGLGYYHEGKKTWYYSFEEKTRLVMKGIESEYYNKVLELVLTIDLSRNELSGQIPNEITKLIHLVTLNLSWNALVGTISESIGAMKTLETLDLSHNHLSGRIPDSLTSLNFLTHLNMSFNNLTGRIPTGNQLQTLEDPWIYEGNHYLCGPPLIRIKCPGDESSSNLPISTSEGEEDGKENDSAMVGFYISMAVGFPFGISILLFTICTNEARRIFYFGIVDRVNYNILQTIAFLTIGLRRMIIWRR* 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6222195 6223646 + CsaV3_1G010010.1 Csa01g01001 515498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01001 483 PANTHER - 25 228 - -
Csa01g01001 483 PANTHER - 267 366 - -
Csa01g01001 483 ProSiteProfiles Leucine-rich repeat profile. 324 346 IPR001611 GO:0005515
Csa01g01001 483 Gene3D Ribonuclease Inhibitor 11 402 IPR032675 -
Csa01g01001 483 PANTHER OS10G0469600 PROTEIN 25 228 - -
Csa01g01001 483 PANTHER OS10G0469600 PROTEIN 267 366 - -
Csa01g01001 483 SUPERFAMILY L domain-like 30 229 - -
Csa01g01001 483 SUPERFAMILY L domain-like 169 388 - -
Csa01g01001 483 Pfam Leucine rich repeat 300 359 IPR001611 GO:0005515
Csa01g01001 483 Pfam Leucine rich repeat 32 94 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01001 - - - csv:101218552 958.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01001 Csa-Chr1:6222195 Csa01g01003 Csa-Chr1:6231501 9.73E-09 dispersed
Csa01g01001 Csa-Chr1:6222195 Csa01g01002 Csa-Chr1:6227481 1.28E-08 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g1 . . Bda06g00701 . . . . Bma12g01103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g01001 . . . Blo15g00108 . . Bpe07g00915 . . . . . . . . . . . Cpe18g00946 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001972 0 0 0 0 0 3 0 4 4 3 3 3 0 4 5 0 3 0 0 3 7 2 1 5 3 2 2 4 3 0 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g01001 Csa_Chr01 FPKM 2.177835 2.80642 0.413075 0.466032 0.365752 0.391577 0.33603 0.0 0.0 0.0