Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01012 ATGGCTCCGACAGAGGTGAAAACGCTATTTCTTTCTCTTTTCGTGTTAATTTGGTTGTCCAGAATGGGCGTCTCTGATACTATGTTTAACGAGTCAGGAATTGGGTATTCGGTTGTTTCCAGAAAGGAAATTTCAAAAGGACGGTGCCCACATGGTTGGATTATTAGCCCAAGCAAGACTAAGTGCTTTGGTTTCATGTCCAGCCCTAAATCATGGAATGATTCAGAGACCCAATGCAATAGTTTTGGTGGGAACTTAGCAGCTCTGGTAACATATCAAGAGTTTAGCTATGCACAAAATCTGTGTAATGGAACTCTTGGTGGCTGTTGGGTTGGTGGCAGAGCGTTCAACTCTTTGAATGATTTCGTTTGGAAGTGGTCAGATAATGTTTCAAAATGGAACGATTCCATTTTTCCCAGCGCAACTTTGCAATCGAACTGCAAAAATGCCTCTTGCCTCCGGAATGATTCGGTTGAAACATGTACATTAATATTTGGTGGACCAGCAACACCATTCCTTAGGGACGAGAAATGCAACAGTTCTCACCCTTTTATATGCATGATAAACCTAGATGATAGATGCCACCGAATGCACTGTCACAAGGAGTATCTAGTTATTCTAGCTGTTGTGAGTGGGTTGATATTTTGCACAACTTTAGCTGTGGTGATTTGGCTTCTAGCCCACAAGAGGAGCAAAAAGCGGAGAAGGTCGCGGAAGCCATCCAACCCTGCAGCTTCTGCACTGGTACCGCCTTTGTGGAGGGTGTTTACCAAAGAAGAGCTAAGATCAATGACAAAAAACTTCAGTGAGGGAAACCGTCTTCTCGGAGATGCAAAAACAGGCGGTACATACAGTGGACTTCTACCTGATGGTTCAAGAGTTGCAATTAAAAGGTTGAAGAAGTCCAGCTTTCAGAGGAAAAAGGAGTTTCATTCAGAAATTGCAAGAGTTGCTAGGCTTCGTCACCCAAATTTAGTTGCCCTGAAAGGATGCTGCTATGACCATGGTGACCGCTACATTGTTTATGAATTCATTGTTAATGGGCCCTTAGATAGATGGCTTCATCATGTACCAAGAGGTGGTCGAAGCTTAGATTGGACTATGAGAATGAAAATTGCCACGACTCTTGCCCAAGGGATTGCGTTCCTTCACGACAAGGTCAAACCACACGTGGTACATCGTGATATCCGTGCGAGTAATGTGCTTCTCGATGAAGAATTTGGAGCACATCTGATGGGAGTTGGCCTATCGAAATTGGTTGCATATGAAGTGATGCATGAGAGGACAGTGATGGCAGGAGGAACCTATGGATACCTTGCTCCTGAATTTGTCTACAGAAACGAGCTAACAACAAAGAGTGATGTCTACAGTTTTGGGGTCCTATTGCTTGAAATTGTAACCGGACGAAGGCCTGCACAGGCAGTTGATTCAGTTGGTTGGCAGAGCATTTTTGAATGGGCAACCCCGCTCGTGCAGGCTCACCGTTACCTAGATCTATTGGATCCTCATATAACAGCCACTTCAACTTCTGAAATCCCAGAGGCTGGCATTGTTCAAAAGGTTGTGGACCTTGTTTATGCTTGCACACAGCATGTCCCGTCCATGCGACCTAGAATGTCACACGTCGTTCATCAACTGCAACAATTGGCTCCCTCTCCTCTCACTACGAAGTAA 1674 44.62 MAPTEVKTLFLSLFVLIWLSRMGVSDTMFNESGIGYSVVSRKEISKGRCPHGWIISPSKTKCFGFMSSPKSWNDSETQCNSFGGNLAALVTYQEFSYAQNLCNGTLGGCWVGGRAFNSLNDFVWKWSDNVSKWNDSIFPSATLQSNCKNASCLRNDSVETCTLIFGGPATPFLRDEKCNSSHPFICMINLDDRCHRMHCHKEYLVILAVVSGLIFCTTLAVVIWLLAHKRSKKRRRSRKPSNPAASALVPPLWRVFTKEELRSMTKNFSEGNRLLGDAKTGGTYSGLLPDGSRVAIKRLKKSSFQRKKEFHSEIARVARLRHPNLVALKGCCYDHGDRYIVYEFIVNGPLDRWLHHVPRGGRSLDWTMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKLVAYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWATPLVQAHRYLDLLDPHITATSTSEIPEAGIVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPLTTK* 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6279057 6283044 + CsaV3_1G010120.1 Csa01g01012 515509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01012 557 ProSiteProfiles Protein kinase domain profile. 269 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01012 557 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 550 - -
Csa01g01012 557 SMART CLECT_2 49 187 IPR001304 -
Csa01g01012 557 Pfam Protein tyrosine and serine/threonine kinase 275 546 IPR001245 GO:0004672|GO:0006468
Csa01g01012 557 SUPERFAMILY Protein kinase-like (PK-like) 242 546 IPR011009 -
Csa01g01012 557 CDD CLECT 61 186 - -
Csa01g01012 557 SUPERFAMILY C-type lectin-like 49 188 IPR016187 -
Csa01g01012 557 Gene3D Transferase(Phosphotransferase) domain 1 345 551 - -
Csa01g01012 557 Pfam Lectin C-type domain 69 187 IPR001304 -
Csa01g01012 557 Gene3D Phosphorylase Kinase; domain 1 248 344 - -
Csa01g01012 557 ProSitePatterns Tyrosine protein kinases specific active-site signature. 391 403 IPR008266 GO:0004672|GO:0006468
Csa01g01012 557 ProSiteProfiles C-type lectin domain profile. 58 187 IPR001304 -
Csa01g01012 557 SMART tyrkin_6 268 546 IPR020635 GO:0004713|GO:0006468
Csa01g01012 557 Gene3D - 36 190 IPR016186 -
Csa01g01012 557 PANTHER - 9 550 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01012 Csa-Chr1:6279057 Csa06g02406 Csa-Chr6:21476372 2.09E-62 dispersed
Csa01g01012 Csa-Chr1:6279057 Csa03g03235 Csa-Chr3:29698154 2.62E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77773 PF07714 PK_Tyr_Ser-Thr 4.30E-40 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01012 - - csv:101218425 1131.32