Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01021 ATGGCGTCAGGATACAAGACTGATGAGGAGACGAACGATAAAGATAATAGTATCTGGGTTTTAGATCACCAGATGGACCAGTCAATGGAGGAGGAGTCTAGGCAGCTAAGAAATGTGCATCAGGAAAAGGATCATTCTGTGTATAAAATTCTACAATTTGCATTCCAAAGCCTTGGAATAGTGTATGGAGATTTGGGGACTTCCCCTTTATATGTCTTCTATAACACATTTCCTGATGGAGTTGAAAATACGGAGGATTTGATAGGAGCTCTGTCATTGATTATATACTCTCTAACTCTCATAACCCTCATTAAGTACGTATTTATTGTCTGCAAGGCAAATGACAATGGTCAAGGTGGAACATTTGCTTTGTATTCATTGCTGAGCCGTCATGCTAACATATTGACTATTCCTAACCATGACCTCAGCGATGAGAAGCTTACAACTTATAGTCGTGCTGTGTTCCGGGAACAATCATTTGCTGCAAAAACTAAGAGACGGCTGGAAGGGCATCATGTTAAGAAACATGCAATTCTTGTTCTCGTTCTTGTTGGCTCTTGCATGGTGATTGGGGATGGAATTTTAACACCTGCTATTTCAGTTCTTTCTGCTGTTGAGGGGATCAACGTTGGTCGTGCAAAAATAAGCGGTGATGTTGCTGTTCTTGTTGCCATTGTCATACTTATTTTCTTGTTTAGCATGCAACGTTATGGCACAGATAAAGTTGGTTGGCTTTTTGCCCCGGTAGTTTTTCTGTGGTTCATCTTAATAGGTGGCATCGGCATATTTAACATCTGCAAATATGATTACACTGTCTTGAGAGCCTTTTCTCCGGTACATATATATCGGTACTTCAAAAGGGGAGGGAAAGATGGATGGACATCTCTTGGAGGGATCATGCTTAGTATTACAGGAACTGAAGCACTTTTTGCAGACCTATCCCATTTTCCAGTTTCCTCCATACAAATTGCTTTTACAGTAGTCGTATTTCCTTGCCTTCTTTTAGCCTACACTGGACAAGTTGCCTATCTCATGAAACACCCAAATTATGTTGTCGGTGCCTTCTACCATTCAATTCCAGAAAGTATATATTGGCCTGTATTTCTTGTTGCAACTACCGCCGCTATCGTTGCAAGCCAAGCCACCATATCTGCAACCTTTTCATTAATCAAGCAAGCCCTTGCACTCGGTTGTTTTCCAAGAGTTAAAGTTGTTCATACTTCTACGAAGTTCCGTAATCAGATATATATTCCTGATATTAATTGGATCCTGATGGTCCTTTGCATTGCCGTGACAGCTGGGTTTCATAATCAAACCCAAATTGGAAATGCTTCTGGAACAGCAGTGATTATAGTGATGTTGGTAACCACATTCCTCATGACTTTAATAATGATATTAGTGTGGCATTCTCACTGGAGTCTAGTTCTGCTCTTCATTTCCTTATCACTGATTGTGGAGGGTTTCTACCTCTCCTCAGTTATTCAGAAGGTTTATCAAGGTGGCTGGGTTCCCCTGGTTATAGCAACAACATTTTTCATCATCATGTACGTTTGGCATTATGGTACGGCTAAACGTTATGAGATTGAGATGCACACTAAGGTTTCAATGGCATGGATTCTTAGCCTTGGCCCCAGTTTAGGACTTGTAAGGGTGCCTGGGATAGGACTTGTGTACACGGAACTAGCAAGTGGTGTCCCCCACATCTTTTCACACTTCATCACAAACTTACCCGCCATTCATTCTGTTGTGGTTTTTGTGTGTTTGAAGTGTTTGCCTGTCCACACAGTCCCAGAAGAAGAGAGATTTCTAGTAAAACGGATTGGACCAAAGAATTTTCGCATGTTTCGATGTGTAGCTAGATATGGTTACAAGGACCTCCACACGAAAGATGATGATTTTGAGAAGAAACTCTTTGATAGCATTTTCTTGTTTGTTCGACTTGAGTCGTTGATGGATGGTGGATCTTCAGATTCAGACGTGTCAAGTCTACTTGATGAACAAAATGAAACAGCTTTTGATTACACACTGAAAGCCATTAATTCAATGTGTTCATCTTCAACAGCCCTACAATTGGCAGACTCAATTGAGATTGTCAATTCTCCATTGCATCAAAACGTATCCACCATAGCACCCGATCGAGAGAATGATCAGACTGAGGTAGATGAGTTAGAATTCTTGGTTAGCAGTAAAAATGTTGGAGTTGTACACTTTCTTGGAAATACAGTAATGAAAGCTAGGAGGGACTCTAGATTCTGTAAAAGGATCGCTATAGATTATATTTATGCCTTTCTTAGAAAGATATGCAGGGAGAACAGCGTTATGTTCAATGTTCCTCATGAGAGTTTGCTTAATGTTGGTCAAACATTCTATGTATGA 2376 40.45 MASGYKTDEETNDKDNSIWVLDHQMDQSMEEESRQLRNVHQEKDHSVYKILQFAFQSLGIVYGDLGTSPLYVFYNTFPDGVENTEDLIGALSLIIYSLTLITLIKYVFIVCKANDNGQGGTFALYSLLSRHANILTIPNHDLSDEKLTTYSRAVFREQSFAAKTKRRLEGHHVKKHAILVLVLVGSCMVIGDGILTPAISVLSAVEGINVGRAKISGDVAVLVAIVILIFLFSMQRYGTDKVGWLFAPVVFLWFILIGGIGIFNICKYDYTVLRAFSPVHIYRYFKRGGKDGWTSLGGIMLSITGTEALFADLSHFPVSSIQIAFTVVVFPCLLLAYTGQVAYLMKHPNYVVGAFYHSIPESIYWPVFLVATTAAIVASQATISATFSLIKQALALGCFPRVKVVHTSTKFRNQIYIPDINWILMVLCIAVTAGFHNQTQIGNASGTAVIIVMLVTTFLMTLIMILVWHSHWSLVLLFISLSLIVEGFYLSSVIQKVYQGGWVPLVIATTFFIIMYVWHYGTAKRYEIEMHTKVSMAWILSLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCLKCLPVHTVPEEERFLVKRIGPKNFRMFRCVARYGYKDLHTKDDDFEKKLFDSIFLFVRLESLMDGGSSDSDVSSLLDEQNETAFDYTLKAINSMCSSSTALQLADSIEIVNSPLHQNVSTIAPDRENDQTEVDELEFLVSSKNVGVVHFLGNTVMKARRDSRFCKRIAIDYIYAFLRKICRENSVMFNVPHESLLNVGQTFYV* 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6337959 6344019 - CsaV3_1G010210.1 Csa01g01021 515518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01021 791 TIGRFAM kup: potassium uptake protein 54 790 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa01g01021 791 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 788 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa01g01021 791 PANTHER POTASSIUM TRANSPORTER 1 788 - -
Csa01g01021 791 Pfam K+ potassium transporter 54 625 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01021 Csa-Chr1:6337959 Csa03g03914 Csa-Chr3:34316948 0 dispersed
Csa01g01021 Csa-Chr1:6337959 Csa01g01022 Csa-Chr1:6345216 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01021 K03549 - csv:101217671 1529.61