Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01022 ATGACTTCAAGAGTGGAAACCGATGATGATTGTGAAACGAGGGGAAGTATGTGGGTTCTGGATCAGAAGCTTGATCAGCCTATGGATGAAGAAGCTGGGAGACTTAGTAATATGTACAAAGAGAAGAAATTCTCAGTATTGTTGCTTCTTCGACTTGCATATCAAAGCCTTGGAGTGGTTTATGGAGATTTGGGGACTTCTCCCCTGTACGTTTTCTACAATACATTTCCTCGTGGGATTTCTGATCCAGAGGATGTAGTTGGAGCACTTTCATTGATTATATACTCTCTCACTCTCATTCCACTCATAAAGTATGTATTTATCGTGTGTAAAGCAAATGACAATGGTCAAGGTGGAACATTTGCTCTCTACTCCTTGCTGTGTCGTCATGCAAAAGTTAAAACTATCCCAAACCAACATAGAACTGACGAGGAGCTAACAACATATAGCCGCTCTAAATTTCATGAGCAATCATTTGCTGCCAAGACTAAAGGATGGCTTGAAAAACAGTCATCCAGGAAGAATGCTTTGCTCATTCTTGTCCTCGTTGGCACTTCCATGGTAGTTGGAGATGGAATTCTCACTCCTGCAATATCAGTTTTATCTGCTGCGGGAGGGATCAAAGTAAACCACCCCCATGTGAGCAGTGACGTAGTTGTGCTTGTTGCTGTTGTGATACTAGTAGGATTATTCAGCTTGCAACGCTATGGTACTGATAGAGTTGGTTGGCTCTTTGCTCCAGTTGTCCTACTCTGGTTTTTTTTAATTGGAGGTATAGGCATGTTCAACATCTGGAAATATGATAAAACCATTCTAAGAGCCTTTTCACCTGTGTATATTGTTCGCTATTTTAGAAGGCGAGGGATGGATGGTTGGACGTCCCTCGGAGGTGTGCTGCTGAGTATAACAGGCACAGAGGCTCTATTTGCCGATCTGGCTCATTTTCGTGTAGCAGCTGTACAAATTGCTTTTACAGTAGTTGTTTTTCCTTGCCTCCTCTTGGCATATTCTGGACAGGCTGCCTACCTTATGAACAATACGGATCATGTGGTTGATGCCTTCTATCGTTCAATCCCAGAATCCATATACTGGCCCGTGTTTGTTGTTGCAACTGCTGCTGCTGTAGTTGCTAGCCAAGCCACTATATCTGCAACATTTTCAATTATCAAGCAGGCTCTTGCTCATGGCTGTTTTCCAAGAGTTAAAGTTGTTCATACCTCAAAGAACTTCCTTGGTCAGATATATGTTCCAGATATTAACTGGATCCTCATGATTCTTTGTATTGCTGTGACAGCAGGATTTAAGAATCAAAGTCAAATTGGAAATGCTTATGGGACAGCGGTTGTGGTAGTCATGCTTGTGACCACACTGCTCATGATTCTAATCATGATCTTAGTGTGGCGCTGTCATTGGGTCATTGCCTTGATTTTCACCGGACTGTCGCTTGTTGTGGAGTGCAGTTACTTTTCTGCTGTTCTCTTCAAGGTTGATCAAGGTGGCTGGGTCCCCCTTGTGATTGCGGGAGCCTTTCTTATCATCATGTATGTGTGGCATTATGGAACTGTTAAACGATACGAATTTGAGCTGCACAGTAAAGTTTCAATGGCATGGGTTCTCGGGCTTGGTCCTAGTCTAGGACTAGTCCGTGTTCCCGGAATTGGACTTGTGTATACTGAGCTAGCAAGCGGTGTACCTCACATATTTTCCCATTTCATTACGAATCTTCCTGCCATCCATTCTGTTGTTGTGTTTGTCTGTGTGAAATATCTTCCCGTCTACACAGTGCCAGAGGAAGAAAGGTTCCTTGTAAAGCGGATAGGGCCGAAGAACTTCCACATGTTTCGAAGTGTTGCTAGATATGGTTATAAAGACCTCCACAAAAAGGATGATGATTTTGAGAAAAAGCTTTTCGATAGCATCTTTCTCTTTGTCAGGCTTGAGTCCATGATGGAAGGTTGTTCAGACTCTGATGAGTACAGTTTGTATGGCCAGCAAACTGAGCATTCTAGGGATGGCTTGTTGATTGGGAACCATGGAAATGAAGCTTCACCCAATTTGGACACATTCTCTTCAGTTGACTCAATCGTGCCTGTTAGATCTCCAACGCGTATGCATAACACGGTAAGATCATCAGAGCAAGCAAGCAACCATACCGATAGCGATGAGATTGAATTCTTGATTAGGTGTAGAGATGCTGGAGTAGTGCACATACTGGGAAACACTGTAATTAGAGCAAGAAGAGAATCAAAATTCTACAAAAAGATAGCTGTCGATTACATATATGCGTTTCTTAGGAAGATTTGCAGGGAGCATAGTGTGATTTTCAATGTTCCTCATGAGAGTCTATTAAACGTTGGCCAAATTTTCTATGTATAG 2376 42.51 MTSRVETDDDCETRGSMWVLDQKLDQPMDEEAGRLSNMYKEKKFSVLLLLRLAYQSLGVVYGDLGTSPLYVFYNTFPRGISDPEDVVGALSLIIYSLTLIPLIKYVFIVCKANDNGQGGTFALYSLLCRHAKVKTIPNQHRTDEELTTYSRSKFHEQSFAAKTKGWLEKQSSRKNALLILVLVGTSMVVGDGILTPAISVLSAAGGIKVNHPHVSSDVVVLVAVVILVGLFSLQRYGTDRVGWLFAPVVLLWFFLIGGIGMFNIWKYDKTILRAFSPVYIVRYFRRRGMDGWTSLGGVLLSITGTEALFADLAHFRVAAVQIAFTVVVFPCLLLAYSGQAAYLMNNTDHVVDAFYRSIPESIYWPVFVVATAAAVVASQATISATFSIIKQALAHGCFPRVKVVHTSKNFLGQIYVPDINWILMILCIAVTAGFKNQSQIGNAYGTAVVVVMLVTTLLMILIMILVWRCHWVIALIFTGLSLVVECSYFSAVLFKVDQGGWVPLVIAGAFLIIMYVWHYGTVKRYEFELHSKVSMAWVLGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERFLVKRIGPKNFHMFRSVARYGYKDLHKKDDDFEKKLFDSIFLFVRLESMMEGCSDSDEYSLYGQQTEHSRDGLLIGNHGNEASPNLDTFSSVDSIVPVRSPTRMHNTVRSSEQASNHTDSDEIEFLIRCRDAGVVHILGNTVIRARRESKFYKKIAVDYIYAFLRKICREHSVIFNVPHESLLNVGQIFYV* 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6345216 6352400 - CsaV3_1G010220.1 Csa01g01022 515519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01022 791 Pfam K+ potassium transporter 54 624 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa01g01022 791 PANTHER POTASSIUM TRANSPORTER 2 790 - -
Csa01g01022 791 TIGRFAM kup: potassium uptake protein 52 790 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa01g01022 791 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 2 790 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01022 Csa-Chr1:6345216 Csa03g01999 Csa-Chr3:15871980 0 dispersed
Csa01g01021 Csa-Chr1:6337959 Csa01g01022 Csa-Chr1:6345216 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01022 K03549 - csv:101217915 1516.13