Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01041 ATGGCCTCAAATTCCTCCCACCTTCTACTAATCCTTCTCTTCATTCTCTCACTCATCAATCCCTCCCTCCAAGATTACTACACTCCCCAAAAGAAAAACATGAACGTAATCGATTCGTGCTGGCGTCAAACCTCCAATTGGGCCAAAAACCGAAAAGCCTTAGCCGACTGTGCAGTTGGCTACGGCAAGGACGCAATCGGAGGCAAATTTGGCACCATTTACACTGTCACTGACCCATCTGACAACCCTTCAAACCCTAAATATGGAACGCTACGTTACGGTGTGATCCAAGACAAGCCATTGTGGATTGTGTTTGGGAAGGACATGGTGATTGTGTTGAAGAATGAGCTGATGGTAAATAGTTTCAAGACCATAGATGGACGTGGGGCTAAAGTGGAAATTGCTTATGGGCCTTGTATTACGGTGCAAGGGGTTAGCCATGTTATTATACATGGAATTAGTATTCATGATTGTAAGCCTGGGAAAGCTGGGCTTGTTAGAGACACTGTATCGCATATTGGGAAACGGAAAGGGTCTGATGGTGATGCTATTGCTGTGTTTGGTTCTTCACATGTTTGGATTGATCATTGCTATTTAGCACGATGTACTGATGGTCTTATTGATGTTATTCATGCTTCCACTTCTGTCACTATCTCAAATAACTACTTCTCTCAACATGATAAGGTGATGCTGCTTGGACATAATGATGGGTTCACTGATGATAAAATTATGAGGGTCACCATTGTTTTCAACCGCTTTGGTGCTGGTCTCATTGAGAGGATGCCCAGGGTTAGGTTTGGTTATGCCCATGTAGCCAACAATAGATACGACGAGTGGAAAATGTATGCCATCGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCTCAAAATTCTTATGCCAAACAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAAAATTGGAAATGGAGATCCTCCAGAGATGTGTTCTTAAATGGCGCTTATTTTGTGCCATCAGGATGGGGAAGCTGCAGCCCAATATATACAAAAGCTCAGTCTTTTCCAGTGGCTCCTGGCTCTATGGTTCCTGCTTTGACTGCAAATTCCGGCCCACTTCGCTGTTTTATTGGCAAAGCTTGCTAA 1146 43.8 MASNSSHLLLILLFILSLINPSLQDYYTPQKKNMNVIDSCWRQTSNWAKNRKALADCAVGYGKDAIGGKFGTIYTVTDPSDNPSNPKYGTLRYGVIQDKPLWIVFGKDMVIVLKNELMVNSFKTIDGRGAKVEIAYGPCITVQGVSHVIIHGISIHDCKPGKAGLVRDTVSHIGKRKGSDGDAIAVFGSSHVWIDHCYLARCTDGLIDVIHASTSVTISNNYFSQHDKVMLLGHNDGFTDDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPQNSYAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVPSGWGSCSPIYTKAQSFPVAPGSMVPALTANSGPLRCFIGKAC* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6486533 6488349 - CsaV3_1G010410.1 Csa01g01041 515538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01041 381 PANTHER PECTATE LYASE 18-RELATED 18 379 IPR045032 GO:0030570
Csa01g01041 381 SMART amb_all 108 305 IPR002022 -
Csa01g01041 381 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Csa01g01041 381 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Csa01g01041 381 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Csa01g01041 381 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Csa01g01041 381 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Csa01g01041 381 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Csa01g01041 381 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Csa01g01041 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Csa01g01041 381 PANTHER PECTATE LYASE 16-RELATED 18 379 - -
Csa01g01041 381 Pfam Pectate lyase 115 299 IPR002022 -
Csa01g01041 381 Gene3D - 34 374 IPR012334 -
Csa01g01041 381 SUPERFAMILY Pectin lyase-like 34 372 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01041 Csa06g03495 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01041 Csa-Chr1:6486533 Csa01g00913 Csa-Chr1:5694974 2.21E-150 dispersed
Csa01g00519 Csa-Chr1:3450230 Csa01g01041 Csa-Chr1:6486533 1.67E-109 transposed
Csa01g01041 Csa-Chr1:6486533 Csa06g03495 Csa-Chr6:28593144 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01041 K01728 - csv:101211379 779.63