Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01075 ATGTCTTGTTCGAATCTGACTATGTGGGTGTCTTCAAAACCCACCGTTTCTGATGCATCCTCCCTGTCTTTCCGCTCTTTTTTGAGCCCTTTTCAACTTCCTTCCCAGAATTCAACCCCTGCTCGATCATGGTCAGTTACTCCAATCCATTGCGGTCTTCGGGAACTCCGAGACCGTATCGATTCGGTGAAGAACACCCAGAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTCCGTAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCCTTCTCTGAAGCCTTAGTTGAAGTCCTTTACAACATCAATGAGCAACTTCAAACAGAAGATGTTGATGTTCCTTTAACCAAAGTAAGACCTGTTAAGAAAGTTGCATTAGTTGTTGTCACCGGTGATAGAGGACTTTGTGGTGGTTTCAACAATAGCATCATTAAGAAAGCTGAAGCTAGAATAAAGGAATTGAAGGCCCTTGGTCTTGATTACACTGTCATTAGTGTTGGAAAGAAGGGTAATTCTTATTTCCTTCGCCGACCGTACATTCCTGTCGATAAGTTCCTTGAAGGTGGTACTCTTCCCACAGCTAAAGAAGCTCAAGCGATAGCTGATGATGTTTTTTCACTCTTTGTTAGTGAGGAAGTTGATAAAGTAGAGCTTTTGTATACAAAATTCGTGTCATTGGTAAAATCTGATCCTGTAATTCATACTCTTCTTCCTCTATCACCAAAAGGTGAGATCTGTGATATAAATGGAGTCTGTGTAGATGCTGCAGAAGATGAGTTTTTCAGGTTGACAACAAAGGAAGGGAAATTGACAGTAGAAAGGGATTCAGTGAGGACAAGCACATCAGATTTTTCACCAATTTTGGAGTTCGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTTTGTATTTGAACAGCCAGATTTTGAGGGCATTGCAAGAGTCATTGGCCAGTGAACTTGCTGCTAGAATGAGTGCTATGAGTAATGCAACCGATAATGCTTCTGAGCTGAAGAGAACTCTGTCTATTGTGTATAATAGACAGCGCCAAGCTAAGATTACTGGAGAAATCTTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA 1122 41.8 MSCSNLTMWVSSKPTVSDASSLSFRSFLSPFQLPSQNSTPARSWSVTPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNSIIKKAEARIKELKALGLDYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT* 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6678624 6679745 - CsaV3_1G010750.1 Csa01g01075 515572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01075 373 Gene3D - 120 243 - -
Csa01g01075 373 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 372 - -
Csa01g01075 373 PANTHER ATP SYNTHASE GAMMA CHAIN 1 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa01g01075 373 ProSitePatterns ATP synthase gamma subunit signature. 358 371 IPR023632 -
Csa01g01075 373 Gene3D ATP synthase, gamma subunit, helix hairpin domain 269 372 - -
Csa01g01075 373 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 52 372 IPR035968 GO:0015986|GO:0045261|GO:0046933
Csa01g01075 373 Gene3D ATP synthase, gamma subunit, helix hairpin domain 52 119 - -
Csa01g01075 373 PRINTS ATP synthase gamma subunit signature 124 143 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa01g01075 373 PRINTS ATP synthase gamma subunit signature 217 234 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa01g01075 373 PRINTS ATP synthase gamma subunit signature 319 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa01g01075 373 PRINTS ATP synthase gamma subunit signature 350 371 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa01g01075 373 CDD F1-ATPase_gamma 53 369 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa01g01075 373 Hamap ATP synthase gamma chain [atpG]. 50 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa01g01075 373 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 52 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Csa01g01075 373 Pfam ATP synthase 53 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01075 Csa06g03519 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00596 Csa-Chr1:3840589 Csa01g01075 Csa-Chr1:6678624 4.25E-28 transposed
Csa03g00512 Csa-Chr3:4279414 Csa01g01075 Csa-Chr1:6678624 3.19E-156 transposed
Csa01g01075 Csa-Chr1:6678624 Csa06g03519 Csa-Chr6:28692844 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01075 K02115 - csv:101214408 688.723