Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01078 ATGGGTTCCAAAGCACTGTGTGTTTTCTTCTTTCTTTTCTTTGTGGCTGTTTCTTTCAGGTATGCTTCAGCACAGGATGAGGAAGACAATGGTCTTGTCATGAATTTTTACAAAGATACGTGTCCCCAAGCTGAAGATATCATCAAAGAACAAGTTAGGCTTCTCTACAAGCGCCATAAGAACACTGCATTCTCTTGGCTCAGAAACATTTTCCATGACTGTGCTGTTCAATCCTGTGATGCCTCTCTGCTGCTGGATTCAACAAGAAGAACCCTTTCAGAGAAGGAAACAGACAGAAGCTTTGGACTTAGGAACTTCCGGTATATTGAGACCATTAAAGAGGCGGTGGAAAGAGAATGCCCTGGAGTTGTCTCCTGTGCAGATATCCTTGTTCTGTCAGCCAGAGATGGCATTGTTTCTCTTGGGGGACCTTATATCCCACTTAAAACAGGCAGAAGAGATGGAAGGAAAAGCAGAGCTGATATTTTGGAAGAGTATCTTCCAGACCACAATGAAAGCATGTCTGTGGTTCTTGAAAGATTTGGTGCCATGGGTATTGACACCTCTGGAGTGGTTGCTTTACTAGGAGCTCATAGTGTTGGTAGAACACACTGTGTGAAGCTGGTGCACCGGCTGTACCCAGAAGTAGACCCTGTGCTGAACCCTGGCCATGTAGAGCACATGTTGTACAAGTGTCCTGATGAGATCCCAGACCCCAAGGCTGTACAGTACGTGAGAAATGATCGTGGTACACCTATGATTCTGGACAACAACTACTATAGAAACATACTTGACAACAAGGGACTGCTGATTGTGGATCACCAACTAGCCACAGACAAGAGAACAAAGCCATATGTGAAGAAAATGGCCAAAAAGCAAGACTATTTCTTCAAGGAATTCTCAAGAGCCATTACCATCCTTTCTGAGAACAACCCTCTCACTGGCACAAAGGGTGAAATCAGGAAGCAGTGTAATGTTGCCAACAAGCTGCACTGA 996 44.58 MGSKALCVFFFLFFVAVSFRYASAQDEEDNGLVMNFYKDTCPQAEDIIKEQVRLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRRTLSEKETDRSFGLRNFRYIETIKEAVERECPGVVSCADILVLSARDGIVSLGGPYIPLKTGRRDGRKSRADILEEYLPDHNESMSVVLERFGAMGIDTSGVVALLGAHSVGRTHCVKLVHRLYPEVDPVLNPGHVEHMLYKCPDEIPDPKAVQYVRNDRGTPMILDNNYYRNILDNKGLLIVDHQLATDKRTKPYVKKMAKKQDYFFKEFSRAITILSENNPLTGTKGEIRKQCNVANKLH* 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6689353 6691943 + CsaV3_1G010780.1 Csa01g01078 515575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01078 331 ProSiteProfiles Plant heme peroxidase family profile. 31 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 SUPERFAMILY Heme-dependent peroxidases 32 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 PANTHER PEROXIDASE 25-RELATED 20 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 CDD secretory_peroxidase 31 326 IPR033905 GO:0004601|GO:0042744
Csa01g01078 331 PANTHER PEROXIDASE 42 20 327 - -
Csa01g01078 331 Pfam Peroxidase 49 291 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g01078 331 Gene3D Peroxidase, domain 2 168 307 - -
Csa01g01078 331 Gene3D - 35 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01078 Csa-Chr1:6689353 Csa06g02555 Csa-Chr6:22639940 3.64E-78 dispersed
Csa01g01078 Csa-Chr1:6689353 Csa03g03263 Csa-Chr3:29846147 7.05E-131 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01078 K00430 - csv:101214168 664.455