Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01099 ATGTTTGGAGCACATGGATTTGAAGATCATCATCATCAGGATGATCTTCTACTGGAGATGACACAGAAAAATTTCGAAACCGAACTCGAAAAATTTGGAGAAGATGAGTTTGAGAGTAGGTCGGTGACCGATGCCATGGATGCTCCTTTGGGAGAAGAACAATGTGATCTTTTGAATCAGAGAAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATTCAGGAAATGGAAGCGTTTTTTAAGGAATGTCCACATCCAGATGACAAGCAAAGAAAACAGCTGAGCCGTGAGTTAGGGCTCGAACCTCTCCAAGTCAAGTTCTGGTTTCAAAACAAGCGCACCCAAATCAAGGCTCAACAAGAACGGCATGAGAATGCAATATTGAAAGCTCAAAACGAAAAACTAAGAGCAGAGAACATGAGGTATAAGGAAGCTCTTTCCAATACTAGTTGCCCTAATTGTGGAGGTCCTGCTGCTCTTGGTGAGATGTCCTTTGATGCTCAACATTTGAGAATCGACAATGCACATCTAAGAGATGAGATTGAGAGATTAAACGGTAATAACAAATATGGTGGGAAGGGATGGGGTTCCCATTCTTCGCATATAGTTTCATGTGGAGGGCAGGTTGGAAGGTCATCATTAAAGCCTCAACAATTGCAAGGAGATGATCATTTGTTAGGGGATATGTATGGAGAGACGACAACGGGGATGATGTTAAAATCGTCGTCAGTTACAACTGAAATTGATAAGCCAGTAATTGTTGAGCTTGCAGTTTCAGCCATGGAAGAAGTATGTAGAATGGCTCAAGAAGGTGAGCCATTGTGGGTTGTTGGTGAAAACTCAATGGAAATGCTTAATGAAGATGAGTACTTGAGGACTTACTCTACACGAATAGGCCCTAGAATTGTGGGACTAACCTCTGAAGCTTCAAGACAAACTTCTATTCTTGCTTTCAATCATTTAAAACTTGTCCATATTCTCATGGACGTGAATCAATGGTCAACCATATTTTGCGGAATTGTTTCAAGAGCATTAACACTCGAAGTCTTATCAAGTGGAGTTGGTGGCGACTATAATGGAGCTCTACAAGTCATGACGGCGGAGTTTCAAGTTCCTTCTCCTTTGGTTCCGACGAGAGAAAATTACTTCGTGAGATATTGCAAGCAGCAGGGAGAGGGAAGTTGGGCTGTGGTGGATGTTTCACTTGATTATTTACGTCCTACTCCTACTTCAAGGACTCGAAGACGACCATCTGGTTGCTTAATCCAAGAACTTCCTAATGGTTACTCAAAGGTGACTTGGGTAGAACATGTAGAAGTGGATGATCGAGCAGTACACAGTTTATACAAAGGAGTGGTGACATGTGGGCTTGCCTTTGGCGCAAAACGATGGATGGCTACTCTTGGTCGACAATGCCAACGCCTAACCAACTCTTCTTCTACCAATATTCCTGCACTTGACATTTGTGTGGTAACGGGGCAAGAGGGGAGGAAGAGCGTTATGAAGTTAGCTGAGAGAATGGTGAGGAGCTTCTGCAGTGGCGTTGGGGCTGCTACTGCACATAATTGGACCACATTATCAACCATTGATTCAGATGATGTTCGAGTCATGGCCAGAAAGAGCCTCGACGACCCTGGCCGACCTCCTGGAATTGTTCTTAATGCAGCTACTTCTTTCTGGATCCCAATTCCCCCTAATAGGGTCTTCAATTTCCTCCGAGATCAAAACACCCGCAATCAGTGGGATATACTTTCAAATGGTGGATTAGTTCAAGAAATGGCTCGCATTGGCAACGATCGAAACTCAGGAAATTGTGTCTCATTACTTCGTGTTAACAGTGCAAATTCAAGTCAGAGCAACATGTTGATACTACAAGAGAGTTGCAGCGACGACATCAGCGGTTCCTACATTATCTACGCACCGGTGGACACCGCGGCCATGAACATGGTTTTAAGCGGCGGTGACCCTGATTACGTGGCTCTCTTGCCATCTGGATTTGCCATACTTCCTGATGGACCGCCAATTGGGCCTGAGGGGCCTCCAGGAATTCTCGAGTTCGGCGCCGGTGGTTCGTTGTTGACGGTTGCTTTTCAGATATTGGTTGATTCTGTTCCAACTGCCAAATTGTCTCTTGGCTCGGTGGCCACCGTCAACAGCCTCATCAAGTGCACGGTGGAGCGAATTAGAGCTGCACTCATGTGTGACCAACCCATCAATTAA 2226 44.83 MFGAHGFEDHHHQDDLLLEMTQKNFETELEKFGEDEFESRSVTDAMDAPLGEEQCDLLNQRNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQIKAQQERHENAILKAQNEKLRAENMRYKEALSNTSCPNCGGPAALGEMSFDAQHLRIDNAHLRDEIERLNGNNKYGGKGWGSHSSHIVSCGGQVGRSSLKPQQLQGDDHLLGDMYGETTTGMMLKSSSVTTEIDKPVIVELAVSAMEEVCRMAQEGEPLWVVGENSMEMLNEDEYLRTYSTRIGPRIVGLTSEASRQTSILAFNHLKLVHILMDVNQWSTIFCGIVSRALTLEVLSSGVGGDYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQQGEGSWAVVDVSLDYLRPTPTSRTRRRPSGCLIQELPNGYSKVTWVEHVEVDDRAVHSLYKGVVTCGLAFGAKRWMATLGRQCQRLTNSSSTNIPALDICVVTGQEGRKSVMKLAERMVRSFCSGVGAATAHNWTTLSTIDSDDVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFNFLRDQNTRNQWDILSNGGLVQEMARIGNDRNSGNCVSLLRVNSANSSQSNMLILQESCSDDISGSYIIYAPVDTAAMNMVLSGGDPDYVALLPSGFAILPDGPPIGPEGPPGILEFGAGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIRAALMCDQPIN* 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6814980 6823080 - CsaV3_1G010990.1 Csa01g01099 515596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01099 741 Pfam START domain 258 476 IPR002913 GO:0008289
Csa01g01099 741 Pfam Homeodomain 64 119 IPR001356 GO:0003677
Csa01g01099 741 Gene3D - 324 471 IPR023393 -
Csa01g01099 741 ProSiteProfiles START domain profile. 248 479 IPR002913 GO:0008289
Csa01g01099 741 Coils Coil 115 150 - -
Csa01g01099 741 Gene3D - 52 138 - -
Csa01g01099 741 CDD homeodomain 63 122 IPR001356 GO:0003677
Csa01g01099 741 SMART START_1 257 476 IPR002913 GO:0008289
Csa01g01099 741 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 26 737 IPR042160 -
Csa01g01099 741 SUPERFAMILY Bet v1-like 248 477 - -
Csa01g01099 741 SUPERFAMILY Bet v1-like 503 731 - -
Csa01g01099 741 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Csa01g01099 741 CDD START_ArGLABRA2_like 252 475 - -
Csa01g01099 741 SMART HOX_1 62 125 IPR001356 GO:0003677
Csa01g01099 741 Coils Coil 169 189 - -
Csa01g01099 741 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Csa01g01099 741 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 26 737 - -
Csa01g01099 741 SUPERFAMILY Homeodomain-like 51 122 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01099 Csa06g03532 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01099 Csa-Chr1:6814980 Csa02g02688 Csa-Chr2:23428044 0 dispersed
Csa01g01099 Csa-Chr1:6814980 Csa06g03532 Csa-Chr6:28760373 0 wgd
Csa01g01099 Csa-Chr1:6814980 Csa07g00370 Csa-Chr7:2759169 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30697 PF01852 START 2.30E-49 CL0209 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01099 K09338 - csv:101212604 1457.58