Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01114 ATGCTCATTTTTCCAACTTTCTTCATTATTTGTTTCATTATCCATGGTAATTCTCAAACTGCAGACCAATACCCATATCGCAGTTGTTCATCCGCCAATTTCACCCAAAGTTCCACCTATCACTCCATCCTCAATCTCCTCCTTTCAAATCTCTCTGCCCATGCCCCCGGAACTAACGGATTCTTCAATACTTCCATCGCCCGACCCCCCAACGACGCGGTTTACGGCCTCTTCCAATGCCGTGGAGATGTCACGAACACCACCTGTCGAAATTGTGTTACTTCAGCTACAAAAAATTCTGCTGAACAGTTTTGTCCCCTGAGCCAAGGTGCTGTAGTTTGGTACGACGAATGCATATTCCGCTATTCTAGCCATTCTTTCTTTTCCGTGATATCCTTAAGGCCAGGTCTGTTAGCTCATAACGAGGCTGATATAGGCATCGACACGGCTCGATTCAACCAACTAGTCATGTCCACTTTGAGGCATACTGCAGCCAGTGCCTCTTCGGTAGACGAATTGTTTGCAAAGCAGCACACATATTTCACGTCGGATATTACCCTTTACACATTAGCACAATGCACCCGTGACTTGTCGTATTTGGATTGCCAACAATGCTTGGCTCAATCTATTGATTACGTTCCCAATTGTTGCGCTAATAAACGAGGGGCGAGAGTTCTGTTTCCTAGCTGTTTTGTTCGTTATGAAATTTACAATTTTTACGAATTCACTTCAAACAATTCAGTTCAAACTCCCCCGCCGTCTCTTCCTTCTTCTCCACCGGGAGAAAACAAAGTCTCACGGGTGTCAATTGTGGCCATTGTGGTTCCAATTGCAATTACTGTCTCGATAATTCTGGTTGCTGTGGGATGGTGGTTCCTGCATCGAAGAGCAAAGAAGAAATACAGTCCAGTAAAGGAAGACAGCGTTATTGATGAGATGAGCACTGCTGAATCTTTACAATTTGATTTCAAAACAATCAATGATGCTACCAACAATTTCTCAGAAGAAAACAGGTTAGGTGAAGGTGGCTTTGGTGCAGTCTACAAGGGTAGGCTTGAAAATGGACAAGAGATAGCTGTGAAAAGACTATCAAGAGGATCTTCGCAAGGTTTTGAAGAGTTCAAGAATGAGGTTATGTTGGTTGCTAAGCTTCAACATAGAAATCTTGTAAAACTATTGGGATTTTGCTTGGATGGTGGAGAAAAGATACTCATCTATGAATACATACCTAATAAAAGCCTCAATTTTTTCTTATTTGATCCAAAGAGACAAAGAGAGTTGGATTGGTTGAAACGATATAAGATCATTCATGGAATTGCTAGAGGAATGTTATATTTACACGAAGATTCTCGTCTTCGAATTATCCACCGTGATCTTAAAGCTAGTAATATCTTGTTAGATAAAAATATGAACCCAAAAATTTCTGATTTTGGTTTGGCAAGAATCGTCCAAGTCGATCAAACTCAAGGAAATACAAATCGAATTGTTGGTACCTATGGATATATGGCTCCCGAATATGCAATGCATGGAAACTTCTCTTTGAAATCTGATGTGTATAGTTTTGGAGTCATAGTCTTCGAAATTTTAAGTGGCAAGAAAAACAACACCTTTTACTTGTCAGATGTTGCCGAAGACATTATGACCCATGCTTGGAAACTATGGACAGATGGAACATCATTAACTTTGTTGGACGCGAGTTTGAGAGAGAGTTACTCAAAACGTCAGGCGCTTAGATGCATTCACATTGCTTTATTATGTGTTCAACATGATCCACTTTGTAGACCTTCCATGGCATCCATTGTTCTTATGCTTAGCAGTCATTCCACTTCTTTGCCCTTGCCTAAAGAGCCAGCATTTTCTATGCGCAGTAAAGATGGTGGCATTGTGATAGAAAGTGATCGGTCTACACGTAAATCTGATCATTCGTCCACTAATGAAATATCTATGTCTGAGTTGTGCCCACGATAG 1968 40.96 MLIFPTFFIICFIIHGNSQTADQYPYRSCSSANFTQSSTYHSILNLLLSNLSAHAPGTNGFFNTSIARPPNDAVYGLFQCRGDVTNTTCRNCVTSATKNSAEQFCPLSQGAVVWYDECIFRYSSHSFFSVISLRPGLLAHNEADIGIDTARFNQLVMSTLRHTAASASSVDELFAKQHTYFTSDITLYTLAQCTRDLSYLDCQQCLAQSIDYVPNCCANKRGARVLFPSCFVRYEIYNFYEFTSNNSVQTPPPSLPSSPPGENKVSRVSIVAIVVPIAITVSIILVAVGWWFLHRRAKKKYSPVKEDSVIDEMSTAESLQFDFKTINDATNNFSEENRLGEGGFGAVYKGRLENGQEIAVKRLSRGSSQGFEEFKNEVMLVAKLQHRNLVKLLGFCLDGGEKILIYEYIPNKSLNFFLFDPKRQRELDWLKRYKIIHGIARGMLYLHEDSRLRIIHRDLKASNILLDKNMNPKISDFGLARIVQVDQTQGNTNRIVGTYGYMAPEYAMHGNFSLKSDVYSFGVIVFEILSGKKNNTFYLSDVAEDIMTHAWKLWTDGTSLTLLDASLRESYSKRQALRCIHIALLCVQHDPLCRPSMASIVLMLSSHSTSLPLPKEPAFSMRSKDGGIVIESDRSTRKSDHSSTNEISMSELCPR* 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6892215 6894893 + CsaV3_1G011140.1 Csa01g01114 515611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01114 655 Pfam Salt stress response/antifungal 29 124 IPR002902 -
Csa01g01114 655 Pfam Salt stress response/antifungal 151 236 IPR002902 -
Csa01g01114 655 MobiDBLite consensus disorder prediction 629 655 - -
Csa01g01114 655 SMART serkin_6 333 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01114 655 Pfam Protein tyrosine and serine/threonine kinase 336 602 IPR001245 GO:0004672|GO:0006468
Csa01g01114 655 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 653 - -
Csa01g01114 655 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Csa01g01114 655 SUPERFAMILY Protein kinase-like (PK-like) 319 625 IPR011009 -
Csa01g01114 655 ProSiteProfiles Gnk2-homologous domain profile. 22 127 IPR002902 -
Csa01g01114 655 ProSiteProfiles Gnk2-homologous domain profile. 133 239 IPR002902 -
Csa01g01114 655 Gene3D Transferase(Phosphotransferase) domain 1 409 613 - -
Csa01g01114 655 Gene3D - 21 127 IPR038408 -
Csa01g01114 655 Gene3D - 140 239 IPR038408 -
Csa01g01114 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Csa01g01114 655 CDD STKc_IRAK 339 604 - -
Csa01g01114 655 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 4 653 - -
Csa01g01114 655 Gene3D Phosphorylase Kinase; domain 1 295 408 - -
Csa01g01114 655 ProSiteProfiles Protein kinase domain profile. 333 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01114 Csa06g03546 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01111 Csa-Chr1:6880609 Csa01g01114 Csa-Chr1:6892215 2.94E-84 dispersed
Csa01g01114 Csa-Chr1:6892215 Csa01g01116 Csa-Chr1:6903507 0 dispersed
Csa01g01117 Csa-Chr1:6908952 Csa01g01114 Csa-Chr1:6892215 2.87E-53 dispersed
Csa01g01118 Csa-Chr1:6912481 Csa01g01114 Csa-Chr1:6892215 3.17E-56 dispersed
Csa01g01113 Csa-Chr1:6887486 Csa01g01114 Csa-Chr1:6892215 6.19E-79 tandem
Csa01g01114 Csa-Chr1:6892215 Csa06g03545 Csa-Chr6:28824485 3.46E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77775 PF07714 PK_Tyr_Ser-Thr 1.10E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01114 - - csv:101205281 1279.23