Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01116 ATGCTCAATTTTCTTACTTTCATTTTCCTCCTCACTCTCCTTACTCATGCATACGCTCAGAACCAAGCCTCTTACCCATATCGCAGATGCTTGACCGGCAATTTCACTCAGAACAGCACCTATCACGCCAACCTCAATCTTCTCTTTTCAACTCTCTCCACCAACGGCCCCCCAGCAAACAGATTCTTCAAATCTTCCGTCGGCCGATCCCCAAACGACACTGTTTATGGTCTCTTCCAGTGCCGTGGAGACGTCACCAACGCCACCTGTCGAACTTTCTTAGCCACCGCAACCAGAGACGCAGTGCGACTGTACTGTCCTATAGCAAAAGGCGCTGTGATTTGGTACGACGAAATCATTTTCCATTATTCCGACCAACCTTTCTTTTCCATCATTACCTCAACCCCAAATTTGGCGTTACTGAATTCGGCTGAGATAGATGTTGACAAGATTCGATTCAACCAACTAGTCATGTCCACGTTGAGAGCCACCGCGGCTCTGGCAGCCTCTTCAGTGGGTGAATTGTTTGCAACCCAGATGGCTAATTTCACACAAGATCGAAATATTTACACATTAGCTCAGTGTACCGACGATTTATCTAATACAGATTGCGTAGAATGCTTACGCCAAGCTACCAGTGGAATTCCGGGTTGTTGTACTGATAAACTGGGCGGCAGAGTTCTGCTTCCCAGTTGTTTTGTTCGTTATGAAGTTTACTCGTTTTACGAAATTTCCATACCGCCTCCCGCAACTCCCACGCCCAATTCCACAATCCCAACACGGCCTCTTCTTCCTTCTTCTTCTCCTCCACCAGGAGAAAGAAGGTCCTCAACGGTGTTAATTGTAGCCATTGTGGCTCCAATTACCGTCTCCATATTGCTGTTTTTCGTGGGATGTTGCTTCCTGCGCCAGAGAGCGAAGAGGAGAAACTCTGCTGTAAAGGAAGATAGTGTTGTTAATGAGATGACCACTGCGGATTCTCTTCAATTTGATTTCAAAAAAATTGAAGCTGCTACTAACAAATTCTCAGAGGAAAACAAATTGGGAGAAGGTGGATTTGGATCTGTCTTCAAGGGTATGCTTGAAGATGGACAAGAGATAGCTGTGAAGAGACTGTCGAGAGGATCTCTGCAAGGTTCAGAAGAGTTCAAGAATGAGGTTATGTTGGTTGCTAAGCTTCAACATAGAAATCTTGTAAGGTTATTGGGATTCTGCTTGGAGGGTGAAGAAAAGATTCTCATCTATGAATTCATTCCCAACAAAAGCCTCGACTTTCTCTTGTTTGATGAAGAGGGACAGAAACAGTTGAATTGGTTGAAACGATATAGGATCATCAATGGAATTGCTCGAGGAATATTGTATCTACATGAAGATTCTCGTCTTAGAATTATTCATCGTGATCTTAAAGCGAGTAACATCTTGTTAGATGAAGATATGAATGCAAAAATTTCAGATTTTGGCATGGCAAGAATTGTTCAAATGGATCAAAGTCAGGGAAATACAAGTAGGATTGTTGGTACCTATGGTTACATGTCTCCTGAGTATGCAATGCATGGAAATTTTTCAATGAAATCCGATGTCTATAGCTTTGGAGTTTTAGTTTTAGAGATGATAAGTGGTATGAAGAACAGCACCTTCTACTTGTCAAATCTTGCCGAAGATATTTTGACATATGCTTGGGCACTGTGGAAGGACGGAATACCATTAGAATTATTGGACCCAACGTTGAAAGATAGTTACTCGAGAAATGAGGTGCTTAGATGCATTCATATTGCTTTATTGTGTGTTCAAGAGGATCCTAACAGCAGACCTTCCATGGCATCCATTGTTCTTATGCTTAATAGTTATTCGGTTACATTGCCAATACCTAAAGAGCCAGCATTGTTCATGCGGAGTAAAGACAATAATGGCACTACTATAGGCAGTGATCATTCTTCTAATAAGTCTACTACTAAGTGGTCTGTCAATGAAACATCTATATCTGAATTGCATCCACGATGA 2001 42.23 MLNFLTFIFLLTLLTHAYAQNQASYPYRRCLTGNFTQNSTYHANLNLLFSTLSTNGPPANRFFKSSVGRSPNDTVYGLFQCRGDVTNATCRTFLATATRDAVRLYCPIAKGAVIWYDEIIFHYSDQPFFSIITSTPNLALLNSAEIDVDKIRFNQLVMSTLRATAALAASSVGELFATQMANFTQDRNIYTLAQCTDDLSNTDCVECLRQATSGIPGCCTDKLGGRVLLPSCFVRYEVYSFYEISIPPPATPTPNSTIPTRPLLPSSSPPPGERRSSTVLIVAIVAPITVSILLFFVGCCFLRQRAKRRNSAVKEDSVVNEMTTADSLQFDFKKIEAATNKFSEENKLGEGGFGSVFKGMLEDGQEIAVKRLSRGSLQGSEEFKNEVMLVAKLQHRNLVRLLGFCLEGEEKILIYEFIPNKSLDFLLFDEEGQKQLNWLKRYRIINGIARGILYLHEDSRLRIIHRDLKASNILLDEDMNAKISDFGMARIVQMDQSQGNTSRIVGTYGYMSPEYAMHGNFSMKSDVYSFGVLVLEMISGMKNSTFYLSNLAEDILTYAWALWKDGIPLELLDPTLKDSYSRNEVLRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPIPKEPALFMRSKDNNGTTIGSDHSSNKSTTKWSVNETSISELHPR* 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6903507 6906111 + CsaV3_1G011160.1 Csa01g01116 515613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01116 666 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Csa01g01116 666 Pfam Protein tyrosine and serine/threonine kinase 345 611 IPR001245 GO:0004672|GO:0006468
Csa01g01116 666 ProSiteProfiles Gnk2-homologous domain profile. 134 241 IPR002902 -
Csa01g01116 666 MobiDBLite consensus disorder prediction 633 666 - -
Csa01g01116 666 MobiDBLite consensus disorder prediction 251 269 - -
Csa01g01116 666 Pfam Salt stress response/antifungal 33 125 IPR002902 -
Csa01g01116 666 Pfam Salt stress response/antifungal 152 238 IPR002902 -
Csa01g01116 666 ProSiteProfiles Gnk2-homologous domain profile. 23 128 IPR002902 -
Csa01g01116 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Csa01g01116 666 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 28 664 - -
Csa01g01116 666 MobiDBLite consensus disorder prediction 251 272 - -
Csa01g01116 666 PANTHER PROTEIN, PUTATIVE ISOFORM 1-RELATED 28 664 - -
Csa01g01116 666 Gene3D - 22 128 IPR038408 -
Csa01g01116 666 Gene3D - 138 241 IPR038408 -
Csa01g01116 666 ProSiteProfiles Protein kinase domain profile. 342 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01116 666 Gene3D Transferase(Phosphotransferase) domain 1 418 620 - -
Csa01g01116 666 SUPERFAMILY Protein kinase-like (PK-like) 328 641 IPR011009 -
Csa01g01116 666 CDD STKc_IRAK 348 614 - -
Csa01g01116 666 SMART serkin_6 342 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01116 666 Gene3D Phosphorylase Kinase; domain 1 302 417 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01116 Csa06g03549 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01113 Csa-Chr1:6887486 Csa01g01116 Csa-Chr1:6903507 1.73E-78 dispersed
Csa01g01114 Csa-Chr1:6892215 Csa01g01116 Csa-Chr1:6903507 0 dispersed
Csa01g01116 Csa-Chr1:6903507 Csa06g03546 Csa-Chr6:28828428 3.79E-180 dispersed
Csa01g01116 Csa-Chr1:6903507 Csa01g01117 Csa-Chr1:6908952 6.77E-42 tandem
Csa06g02318 Csa-Chr6:20832489 Csa01g01116 Csa-Chr1:6903507 3.03E-08 transposed
Csa01g01116 Csa-Chr1:6903507 Csa07g00381 Csa-Chr7:2831762 8.17E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77776 PF07714 PK_Tyr_Ser-Thr 8.60E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01116 - - csv:101221736 1290.4