Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01128 ATGGCTGCTACAACATTTGTTTGTTCCATTACTCTGAGTTTGTTGGCGTTGGCACTAATTAACCATCCTCCTCTCGCATTTGCTCAGCCCAGATTCTCCAACTATATTTGCGTCGACGATACCAAAAACAACCACACAACCGACGCCGCTGCCTACAAAGCCAATCTGAACCACCTCCTCACCACCTTCACCACCGACCATCGTATCGACTATGGCTTCTACAACTTCTCTTACGGCGCCGCTGAAAACAAAGCAAACGTCATCGGGCTCTGCAGAGGGGACGTTTCGCCTGAGACTTGCCGGAAATGCCTCAACGACTCCAGAGATCTTCTCCCTGTGCGATGTCCGACCCAAAAGGAAGCCATTGGATGGTACCAAAATTGCATGCTCCGTTACTCCGACCGCCCCATCCTCGGCTCCATGGAACTTTCACCCTCTATTCCTGTGGGGTATCCGTTCAATGCGTCGTATCCAGAACGTTTCACCCAGGTCGCTAGTAGTCTGATTGCAAGTCTCATACCCAAGGCCTCCACCGGCAATTCCCGTGTGAAATTTTCTACAGGGAACACATCTCTTCCAGATTTGCCCACAATTTATGGTTTTGCCCAGTGCACCCCGGATTTGTCCCAAAGGCAGTGCAACGAGTGCTTGACTGAGGCTCTGCCAATGATCCAAGACTGCTGTGTCGGAAACCTTTGGGGCAGAGTTGTTACACCCAGTTGTCTTTTTCGATATTCAAATTTCCCTATCATTCAATCGCAGCCGTTGCAACCGCCGTCACCTTCCCCTGTTCCTCCTCTGCTTAACGGAACTACCCACCACGGAAATAAAAGAGAACTCTCTGGAACTTTCATAGCTGTGATTGTGCCAGTGGTTGTTGTTGTAGTTTTACTACTGACGATCGCCGTGTACTTAGGTGTGAGAAAAAGTAGCTCAAAGATCGATGAAGAAGAATATCGAACCGAGGAAGATATGACGACCATGGGGTTCGTACAGTTCAATTTCGACATCATTCGAAAGCTAACAGATGAATTTTCAGATGAAAATAAAGTTGGGGAAGGTAGATTTGGAGCAGTTTACAAGGGGAAGCTTCCAAACGGACGAATCGTAGCGGTGAAAAGGCTTTCTCAAGCTTCAGGACAGGGAGATGTTGAGTTTAAGAACGAACTGGTTTTGGTTTCTAAGCTTCACCATCGGAATTTAGTTAAGCTTTTGGGCTTCTGCTTCAAAGAAAATGAAAAGCTTCTCGTTTATGAGTTTTTGCACAATGGAAGCCTTCATAATTTCATTTTCGATCCACTCAAGCGTCAAAGTTTAGATTGGACAACACGCTACAAAATCATAAGAGGCATTACTCGAGGACTTACTTATCTTCATGAAGATTCTCGAATCAAAATTATTCATCGAAACTTAAAAGCCAGTAACATTTTATTAGATATAGAAATGAATGCTAAAATTACAGATTTTGGTGTTGCAAAGCTATTCGCATCCGAACAAACACATGGTGATACAAATACAATAATAGGCACATCTGGGTATATGGCTCCCGAATACGTAAGGCATGGACATCTTTCATCGAAGTCGGACGTCTTTAGTTTTGGTGTTTTAGTTTTAGAGATTGTGACTGGACAAAGAAATAATCGAACTTACAACAACGTTGAAAACATAGAAGACCCTCTTATAAGCTATGCATGGAGAAATTGGAGGGAGGGAACTCCGTTGAATATTGTAGATCCTTCTATTGAGATACAAAAGGAAGAAGAAAGTGAAGTGACAAGATGCATTCATATCGGGTTACTATGCATTCAAGAAAAGGTTGATGAAAGGCCAAAAATGGCAACTGCACTTCTCATGATCAACGGTGATTTAACTGATTTTCCTAAACCTTCCCAGCCATCTTTCTTTATGAATGCAAGTACCAAACAAAATAGCTCTTAG 1938 43.55 MAATTFVCSITLSLLALALINHPPLAFAQPRFSNYICVDDTKNNHTTDAAAYKANLNHLLTTFTTDHRIDYGFYNFSYGAAENKANVIGLCRGDVSPETCRKCLNDSRDLLPVRCPTQKEAIGWYQNCMLRYSDRPILGSMELSPSIPVGYPFNASYPERFTQVASSLIASLIPKASTGNSRVKFSTGNTSLPDLPTIYGFAQCTPDLSQRQCNECLTEALPMIQDCCVGNLWGRVVTPSCLFRYSNFPIIQSQPLQPPSPSPVPPLLNGTTHHGNKRELSGTFIAVIVPVVVVVVLLLTIAVYLGVRKSSSKIDEEEYRTEEDMTTMGFVQFNFDIIRKLTDEFSDENKVGEGRFGAVYKGKLPNGRIVAVKRLSQASGQGDVEFKNELVLVSKLHHRNLVKLLGFCFKENEKLLVYEFLHNGSLHNFIFDPLKRQSLDWTTRYKIIRGITRGLTYLHEDSRIKIIHRNLKASNILLDIEMNAKITDFGVAKLFASEQTHGDTNTIIGTSGYMAPEYVRHGHLSSKSDVFSFGVLVLEIVTGQRNNRTYNNVENIEDPLISYAWRNWREGTPLNIVDPSIEIQKEEESEVTRCIHIGLLCIQEKVDERPKMATALLMINGDLTDFPKPSQPSFFMNASTKQNSS* 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6962082 6965632 + CsaV3_1G011280.1 Csa01g01128 515625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01128 645 ProSiteProfiles Gnk2-homologous domain profile. 143 250 IPR002902 -
Csa01g01128 645 Gene3D - 33 136 IPR038408 -
Csa01g01128 645 Gene3D - 152 249 IPR038408 -
Csa01g01128 645 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 37 641 - -
Csa01g01128 645 ProSiteProfiles Gnk2-homologous domain profile. 32 137 IPR002902 -
Csa01g01128 645 Gene3D Transferase(Phosphotransferase) domain 1 421 626 - -
Csa01g01128 645 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 37 641 - -
Csa01g01128 645 Pfam Salt stress response/antifungal 37 134 IPR002902 -
Csa01g01128 645 Pfam Salt stress response/antifungal 158 247 IPR002902 -
Csa01g01128 645 Gene3D Phosphorylase Kinase; domain 1 306 420 - -
Csa01g01128 645 Pfam Protein kinase domain 346 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01128 645 CDD STKc_IRAK 351 621 - -
Csa01g01128 645 SUPERFAMILY Protein kinase-like (PK-like) 326 618 IPR011009 -
Csa01g01128 645 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Csa01g01128 645 ProSiteProfiles Protein kinase domain profile. 345 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01121 Csa-Chr1:6924948 Csa01g01128 Csa-Chr1:6962082 2.95E-78 dispersed
Csa01g01128 Csa-Chr1:6962082 Csa06g03546 Csa-Chr6:28828428 0 dispersed
Csa06g03555 Csa-Chr6:28873717 Csa01g01128 Csa-Chr1:6962082 1.52E-50 dispersed
Csa01g01127 Csa-Chr1:6949724 Csa01g01128 Csa-Chr1:6962082 0 tandem
Csa01g01128 Csa-Chr1:6962082 Csa01g01129 Csa-Chr1:6967832 2.32E-43 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77779 PF00069 Pkinase 3.20E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01128 - - csv:101215640 1253.04