Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01130 ATGGGGTCGCCTGAACTTACGGATTGGGTGTTCGATTACGGTGTGATTGAGAACATTCCTGTCCCCGGTGGTGACCTGCCTTCACTGGATCTTCCCTCTTTCACTTTGCCTTCTTGCGATTTCACTGCCTCCTTCAGGGAAGACTTTGATGAGCCACTTGGAATGGAAGAAGATGTAAAAGAATCTAGGTCCAGGAAAAGGATGAGCTCTGGATCATCAAATGCATTCGAGTCCAAGGCACGTAAAGAGAAAATACGGAGGGATAAACTAAACGACAGGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGCCTCCCAAAATTGATAAGTCTGCTATTTTGGGTGATGCAGTTCGAATGATTATACAGCTAAGGGATGAGGCTCAGAAACTCAAGGAGTCTAATGAAAGTTCTTTGGAGAAAATTAATGAAATGAAGGCTGAAAAGAATGAACTACGAGATGAAAAACAAAGGTTGAAAGAAGCAAAAGATAGCCTTGAAAAGAAAATGAAGGGCTTTAATACACAACCAACCTTCTTGCCTCACCCTCCAGCAATTCCTGCTGGATTTTCTTCTCCAAATCAGATTGTTGGGGGGAAATTGGTACCTGTGATTGGATATCCAGGAGTATCCATGTGGCAGTTTATGCCTCCGGGAGCCATTGATACATCGCAAGACCACGTTCTTCGGCCACCAGTCGCCTGA 708 44.21 MGSPELTDWVFDYGVIENIPVPGGDLPSLDLPSFTLPSCDFTASFREDFDEPLGMEEDVKESRSRKRMSSGSSNAFESKARKEKIRRDKLNDRFLELNSILNHGRPPKIDKSAILGDAVRMIIQLRDEAQKLKESNESSLEKINEMKAEKNELRDEKQRLKEAKDSLEKKMKGFNTQPTFLPHPPAIPAGFSSPNQIVGGKLVPVIGYPGVSMWQFMPPGAIDTSQDHVLRPPVA* 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6972358 6976069 - CsaV3_1G011300.1 Csa01g01130 515627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01130 235 Pfam Helix-loop-helix DNA-binding domain 78 125 IPR011598 GO:0046983
Csa01g01130 235 MobiDBLite consensus disorder prediction 52 83 - -
Csa01g01130 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 125 IPR011598 GO:0046983
Csa01g01130 235 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 4 235 - -
Csa01g01130 235 CDD bHLH_AtILR3_like 79 154 - -
Csa01g01130 235 SMART finulus 80 131 IPR011598 GO:0046983
Csa01g01130 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 148 IPR036638 GO:0046983
Csa01g01130 235 Coils Coil 122 177 - -
Csa01g01130 235 PANTHER BHLH TRANSCRIPTION FACTOR 4 235 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Csa01g01130 235 Gene3D - 77 151 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01130 Csa-Chr1:6972358 Csa03g02287 Csa-Chr3:20405212 4.74E-76 dispersed
Csa01g01130 Csa-Chr1:6972358 Csa06g03326 Csa-Chr6:27815147 1.79E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30698 PF00010 HLH 4.10E-09 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01130 - - csv:101208894 469.544