Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01146 ATGGCCGATGAATATCCAGCCGGAAGCCTCTTCTCGCCGGCAGTTACCAATACCTCACCGTGTTCCGTCGGCAACTCCACCTTCTTGATTGATTCAACCATTACATCAGCTTCTAATTGGAACCAAAGTTTTCTTGGATGGAATGATGAACAAAGAGTTGACACCACTGTGGTGGTGGATTCAATGACGGTCACAAAATTAAATTATGATGATCAAGAAATTACTTGTGGATCCGAGGAGCAACAAAATCCTAACATGTTTTTCAAGTCCACCGATGATGATCATCACTCTTTGTTTTTAATGGAACAACCTTATAATATTCAAACCGCTACAAATCTTTACCATGATGTTGTCACAACTACAACTAGCCAAGTGTTACCAATGGCTTTCCCTTTTGAGGCCATTTCCATTGGGTATACTCCAACGTTGTTGCCATGTTCATCACTGGATCAACCAACACAATTTCTTGCCAACAATCGAACCATTAATAATTGTTGTTCCTTAACAAATCCGGATGAGTTGTTGTCTTGTCATCCTATGTTTCAAACACAGTTGTTACATCCTCCTCCCCTCAATTTCTCCAATGGAATTATACCCAAATGCCCAACAAAGTTGATGGGTTGTGATGAAGTTGTCGAAGATTGGAGTAGGGTTGAGAGGGAAAACGAAAGTAAAGAAATTGCAATAATCAAAAGGCCAAGAAGTGACAATTTGCCATCCCCATTACCCACTTTTAAGGTTCGAAAAGAGAAGCTTGGCGACAAGATCACAGCTCTTCAACAACTTGTTTCCCCTTTTGGAAAGACTGATACTGCCTCAGTTCTACATGAAGCAATTGAGTACATCAAGTTTCTTCACAACCAAATTCGTGTTTTGAGTACTCCATATATGGAAATTGGAGACCAAAATCAAGAGCCAAAGATTATTAGTGAGGAAGAATTGAAGAACACCAACGAGAATATGAAAGAAGATCTAAGAAGTCGAGGACTTTGTCTAGTGACAATTCCAAGTACAGTTGCATTAGCAAATGGTAATATACTTAATTTCTGGTCTCCCACATTTGGAGGTACTTTTAGATAA 1080 39.44 MADEYPAGSLFSPAVTNTSPCSVGNSTFLIDSTITSASNWNQSFLGWNDEQRVDTTVVVDSMTVTKLNYDDQEITCGSEEQQNPNMFFKSTDDDHHSLFLMEQPYNIQTATNLYHDVVTTTTSQVLPMAFPFEAISIGYTPTLLPCSSLDQPTQFLANNRTINNCCSLTNPDELLSCHPMFQTQLLHPPPLNFSNGIIPKCPTKLMGCDEVVEDWSRVERENESKEIAIIKRPRSDNLPSPLPTFKVRKEKLGDKITALQQLVSPFGKTDTASVLHEAIEYIKFLHNQIRVLSTPYMEIGDQNQEPKIISEEELKNTNENMKEDLRSRGLCLVTIPSTVALANGNILNFWSPTFGGTFR* 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7106592 7110120 + CsaV3_1G011460.1 Csa01g01146 515643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01146 359 Gene3D - 246 311 IPR036638 GO:0046983
Csa01g01146 359 PANTHER TRANSCRIPTION FACTOR BHLH103 2 341 - -
Csa01g01146 359 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 2 341 - -
Csa01g01146 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 285 IPR011598 GO:0046983
Csa01g01146 359 CDD bHLH_AtbHLH_like 242 293 IPR045239 -
Csa01g01146 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 246 301 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01146 Csa-Chr1:7106592 Csa03g00554 Csa-Chr3:4716554 4.05E-47 dispersed
Csa01g01146 Csa-Chr1:7106592 Csa06g03565 Csa-Chr6:28902722 2.90E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01146 - - csv:105435148 728.398