Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01148 ATGAATCCTCTTCCTCCTAAAAGGGCCGTCTTCCTTATTTCATTGTTTTTGCTCATTTTTGTTGGCAGCTATTTTAGCGATGGGCTTCAGATCAATTCCAATCATTCTACAATTCCAATAATCAAAGATGGCGATCACTCGGTATCTAGCAACAAGAATTTCGTTCTTGGATTCTTCAGTCTCAACAATTCCACCACTACCCGGTATGTCGGAATTTGGTACAATCAAATTCCTCAACAAACCATCGTTTGGGTCGCCAATAGAAACCAACCCCTTAACGATACCTCAGGAACCTTCGCCCTCGACAGCCATGGAAACGTCATCGTTTTCAGTCCCACACAAACCATATCTCTTTGGTCTACTAACACTACCATCCAATCAAAAGACGATGTGTTGTTTGAGCTTCAGAATACCGGAAATCTCGCCTTGATTGAACGAAAGACCCAAAAGGTTATATGGCAAAGCTTTGATTATCCATCTCATGTCCTTCTTCCCTACATGAAATTGGGGCTGAACCGGCGGACCGGTTTCAGTTGGTTCCTAACTTCATGGAAGGCGCAAGACGATCCAGGAACTGGGAGCTTCAGTGTTCGGATCAACCTAACCGGGTATCCACAACTAATTTTGTACAATGGGAGTTTTCCACGGTGGCGTGGAGGACCATGGACAGGGAAAAGATGGAGTGGAGTACCTGAAATGACAAGAGCATTTGCAATCAACACATCATATGTGGACAACAGTGAAGAAATTTTCATAACCAACGGTCTAATGGACGACACGTTTTTAATGAGAATGACTCTAGATGAATCCGGTCTGGTGCATCGAACCATATGGAACCAACAAGAGAAAACATCGACCGAAGTATGGTCAGCTCCCGATGAATTCTGTGACAGCTACAATAGGTGCGGTTTGAACAGTAATTGTGACCCATACAATGTAGAGCAGTTCCAATGCACGTGTCTACCTGGGTTTGAACCATGGTCCAACCAAAGTTGGTTCTTCAGAAACCCATTGGGTGGGTGCATCAGGAAGAGATTAAACACCACATGTCGAAGTGGAGAGGGTTTTGTGAAGGTGGTATATGTGAAGGTTCCAGATACATCGACGGCACTTGTGGATGAGAGTATGAGTTTAAAATCGTGCGAACAAGCGTGTTTAAGTAATTGCAACTGTACTGCTTACACAAGTGCAAATGAGATGACGGGGACTGGGTGCATGATGTGGCATGGAGATTTGGTTGACACGCGGACCTATGTCAATACAGGTCAAGATCTATATGTACGAGTTGATGCTATTGAATTAGCTGAATATGCAAAACGAAAATCAAAACGCTATCCAACAAAAAAGGTGATAGCAATTGTTGTTGGGTCTTTTGTTGCATTGGTGCTACTTGTGACCTTGCTAATCTATCTATGGGGAACAACTAGAAAAATGAATGACACAGAAAAGGAGAGATTGAGGTGTTTAAATCTTAACCTTAGGGAATCTCCAAATTCAGAATTTGATGAAAGTAGGACAGGTTCAGATTTTCCTGTATTTGACTTGCTGACAATAGCAGAGGCAACCGACCATTTTTCAATTAATAACAAGCTGGGAGAAGGTGGCTTTGGCGCAGTTTATAAGGGTAAGTTTAAAAATGGAGAGGAAATTGCAGTTAAAAGGTTGGCTAAGAATTCAAGGCAAGGAGTTGGGGAGTTCAAGAATGAAGTCGCTCTAATCGCGAAGCTCCAACATAGAAATCTTGTCAGAGTTTTAGGCTACTGCGTTTATAAGAATGAAGAGAAGATGCTTGTGTATGAATACTTGCCAAATAAAAGCTTGGACTATTTCATCTTTGATGCAACCAAGAGGGTATTGCTCAATTGGAAAAGACGGTTTGAAATCATACGTGGTATTGCACGAGGGATCTTATATCTTCATCAAGATTCTAGATTAAAAATCATTCATCGGGATTTGAAGGCAAGCAATATACTACTAGATGCTGATTTGAATCCCAAAATTGCAGATTTTGGAATGGCAAGAATATTTGGTCAAGATCAAATTCAAGCAAACACGAATCGTATAGTGGGAACATATGGTTATATGTCACCAGAGTACGCAATGGAAGGCTTGTTTTCAGTGAAATCTGATGTATATAGCTTCGGCGTTTTGGTGCTAGAGCTGATTACAGGAAAAAGGAACAACTATGATTTCACCTACTTAAACTTGGTTGGACATGTATGGGAGCTTTGGAAATTGGACAATGCAATGGAAATAGTGGACTCAAGTTTGGAAGAATCAAGTTGTGGATATGAAATCATGAGATGCCTCCAAATTGGGTTATTATGTGTGCAGGAGGATCCAACTGACCGTCCGACCATGTCAACTGTAACTTTCATGTTGGAGAATGAAGTGGAAGTTCCTTCTCCAAAGAAACCTGCTTTTATCTTAAAGAAAAGGTATAACAGTGGAGATTCATCCACCAATACTGAAGGAACCAACTCTGTAAATGGTCTGACAATTTCCATTGTAAGTGCTCGTTAA 2523 41.22 MNPLPPKRAVFLISLFLLIFVGSYFSDGLQINSNHSTIPIIKDGDHSVSSNKNFVLGFFSLNNSTTTRYVGIWYNQIPQQTIVWVANRNQPLNDTSGTFALDSHGNVIVFSPTQTISLWSTNTTIQSKDDVLFELQNTGNLALIERKTQKVIWQSFDYPSHVLLPYMKLGLNRRTGFSWFLTSWKAQDDPGTGSFSVRINLTGYPQLILYNGSFPRWRGGPWTGKRWSGVPEMTRAFAINTSYVDNSEEIFITNGLMDDTFLMRMTLDESGLVHRTIWNQQEKTSTEVWSAPDEFCDSYNRCGLNSNCDPYNVEQFQCTCLPGFEPWSNQSWFFRNPLGGCIRKRLNTTCRSGEGFVKVVYVKVPDTSTALVDESMSLKSCEQACLSNCNCTAYTSANEMTGTGCMMWHGDLVDTRTYVNTGQDLYVRVDAIELAEYAKRKSKRYPTKKVIAIVVGSFVALVLLVTLLIYLWGTTRKMNDTEKERLRCLNLNLRESPNSEFDESRTGSDFPVFDLLTIAEATDHFSINNKLGEGGFGAVYKGKFKNGEEIAVKRLAKNSRQGVGEFKNEVALIAKLQHRNLVRVLGYCVYKNEEKMLVYEYLPNKSLDYFIFDATKRVLLNWKRRFEIIRGIARGILYLHQDSRLKIIHRDLKASNILLDADLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLVLELITGKRNNYDFTYLNLVGHVWELWKLDNAMEIVDSSLEESSCGYEIMRCLQIGLLCVQEDPTDRPTMSTVTFMLENEVEVPSPKKPAFILKKRYNSGDSSTNTEGTNSVNGLTISIVSAR* 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7120780 7124135 - CsaV3_1G011480.1 Csa01g01148 515645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01148 840 CDD B_lectin 40 159 IPR001480 -
Csa01g01148 840 Pfam PAN-like domain 350 415 IPR003609 -
Csa01g01148 840 ProSiteProfiles PAN/Apple domain profile. 350 430 IPR003609 -
Csa01g01148 840 SMART ntp_6 351 429 IPR003609 -
Csa01g01148 840 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 190 IPR036426 -
Csa01g01148 840 Gene3D Laminin 296 345 - -
Csa01g01148 840 Pfam Domain of unknown function (DUF3403) 797 840 IPR021820 GO:0004674
Csa01g01148 840 Gene3D - 32 156 IPR036426 -
Csa01g01148 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Csa01g01148 840 PIRSF SRK 3 840 IPR024171 GO:0004674
Csa01g01148 840 Gene3D Phosphorylase Kinase; domain 1 499 601 - -
Csa01g01148 840 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 13 837 - -
Csa01g01148 840 CDD PAN_AP_plant 347 429 - -
Csa01g01148 840 SMART serkin_6 525 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01148 840 Pfam Protein tyrosine and serine/threonine kinase 526 791 IPR001245 GO:0004672|GO:0006468
Csa01g01148 840 ProSiteProfiles Bulb-type lectin domain profile. 39 156 IPR001480 -
Csa01g01148 840 ProSiteProfiles Protein kinase domain profile. 525 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01148 840 Pfam D-mannose binding lectin 81 185 IPR001480 -
Csa01g01148 840 SMART blect_4 40 159 IPR001480 -
Csa01g01148 840 Gene3D Transferase(Phosphotransferase) domain 1 602 805 - -
Csa01g01148 840 SUPERFAMILY Protein kinase-like (PK-like) 509 808 IPR011009 -
Csa01g01148 840 PANTHER - 13 837 - -
Csa01g01148 840 CDD STKc_IRAK 531 796 - -
Csa01g01148 840 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Csa01g01148 840 ProSitePatterns Protein kinases ATP-binding region signature. 531 553 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01148 Csa-Chr1:7120780 Csa03g04115 Csa-Chr3:36063471 0 dispersed
Csa01g01147 Csa-Chr1:7111962 Csa01g01148 Csa-Chr1:7120780 1.21E-41 tandem
Csa01g01148 Csa-Chr1:7120780 Csa01g01149 Csa-Chr1:7126345 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77780 PF07714 PK_Tyr_Ser-Thr 5.10E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01148 - - csv:101214023 1692.94