Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01149 ATGAATCCTCTTCTTCCTCAACGGCCCGTCTTCCTCATTTCTTTGTTTTTCGTAATTTTTGTTGGCACCACCCATTTTAGCTTTGGGCTTCAGATCAATTCCAATTCCACAATTCAAATCATTAAAGATGGAGATCTCTTGGTATCCACCAACAAAAGATTCGCACTTGGGTTCTTCAATTTCAACAATTCCACCACTCGACGATATGTCGGAATTTGGTATAATCAAATTCCCCAATTAACCCTCGTTTGGGTTGCCAACAGAAACCACCCCCTTAACGACACTTCAGGAACCTTAGCCCTCGACCTTCATGGAAACGTCATTGTTTTCACCCCGACGCAAACCATATCTCTTTGGTCCACCAACACTACCATCCGATCGAACGACGACGTGTCGATTCAGCTTTCCAATACAGGAAATCTCGCCCTGATTCAACCACAAACCCAGAAGGTTATATGGCAGAGCTTTGATTATCCATCTAATGTCTTTCTTCCCTACATGAAACTAGGAGTGAACCGTCGGACCGGGTTGAGCTGGTTTCTAACTTCATGGAAGGCGCTCGATGATCCAGGAACCGGGAGCTTTACTAGCCGGATTGACCCCACTGGGTACCCCCAGCTGATTTTATACGAGGGGAAGGTTCCACGGTGGCGAGCAGGGCCATGGACAGGAAGAAGATGGTCCGGAGTACCTGAAATGACAAGGTCGTTTATAATCAACACATCCTATGTCGACAACAGTGAAGAAGTTTCCCTAACAAACGGTGTAACAGTGGACACAGTTTTAATGAGAATGACTCTAGACGAATCCGGTTTGGTTCATCGGTCCACATGGAACCAACATGAGAAAAAGTGGAACGAATTTTGGTCAGCTCCAATTGAATGGTGTGATACCTACAACCGGTGCGGTTTGAACAGTAATTGCGACCCATACGACGCGGAGCAGTTCCAGTGCAAGTGCCTACCTGGATTCAAACCACGATCGGAAGAGAATTGGTTCTATAGAGATGCGTCTGGTGGGTGCATCAGGAAGAGGTCGAACGCAACGTGTCGAGCTGGAGAAGGTTTTGTGAAGGTGGCACGTGTGAAGGTTCCAGATACATCGATAGCACATGTGGATAAGAATATGAGCTTAGAAGCGTGCGAACAGGCGTGTTTAAATAATTGTAACTGTACCGCTTACACGAGTGCAAATGAGATGACGGGGACAGGGTGCATGATGTGGCTTGGTGATTTGATCGACACGCGGACCTATGCCAGCGCCGGTCAAGATCTATATGTAAGAGTTGATGCTATTGAATTAGCTCAGTATGCACAAAAATCAAAAACCCATCCAACAAAAAAGGTAATAGCCATTGTTGTGGTGTCTTTTGTTGCATTGGTGGTACTCGTGACCTCGCTATTTTATTTATGGGACGTGGTTAGAAAAAACAAGGAGAGATCGAGGACTTTATCTTTTAACTTTATTGGAGAACTTCCAAATTCAAAGGAATTTGATGAAAGTAGAACAAGTTCAGATTTGCCTGTATTTGACTTGTTGACCATAGCAAAGGCAACTGACCATTTTTCATTTACTAACAAGCTTGGCGAAGGTGGCTTTGGTGCAGTTTATAAGGGAAAGCTTACAAATGGAGAGGAAATAGCAGTTAAGAGGTTGGCTAAGAATTCAGGGCAAGGAGTTGGAGAGTTCAAGAATGAAGTTAATTTAATTGCAAAGCTTCAACATAGAAACCTTGTCAAAATCTTAGGTTACTGCGTTAAGAATGAAGAGAAAATGATTGTGTACGAATACTTGCCAAACAAGAGCTTGGACACTTACATCTTTGATGAAACCAAGAGTGGTTTTCTTGATTGGAAAAAACGTTTTGAAATTATATGCGGCATCGCACGAGGGATCTTATATCTTCATGAAGATTCGAGATTGAAAATTATTCATCGAGATTTGAAGGCAAGTAATATACTACTGGATGCTAATTTGAATCCCAAAATAGCAGATTTCGGTATGGCAAGAATATTTGGCCAAGATCAAATTCAAGCAAACACAAATCGTATTGTTGGAACGTATGGATATATGTCACCGGAATATGCAATGGAAGGCCTATTTTCAGTGAAATCAGATGTGTATAGCTTTGGAGTTTTGGTACTAGAGATGATTACGGGCAAAAAGAATACCAACTACGATTCCTCCCACTTAAACTTGGTTGGACATGTTTGGGAGCTCTGGAAACTGGACAGTGTAATGGAACTAGTGGACTCCAGTTTGGAAGAATCAAGCTGTGGATACAAAATCATAATAAGATGCCTCCAAATTGGATTATTATGTGTTCAAGAGGATCCGACAGATCGTCCAACCATGTCAACTGTCATCTTCATGTTGGGGAGTGAAGTGAGTCTTCCTTCTCCAAAGAAACCTGCTTTTATCTTAAAGAGAAAATACAACAGTGGAGATCCATCTACCAGTACAGAAGGAGCCAACTCTGTAAATGATCTAACAATTTCTATAATCCATGCTCGTTGA 2517 42.35 MNPLLPQRPVFLISLFFVIFVGTTHFSFGLQINSNSTIQIIKDGDLLVSTNKRFALGFFNFNNSTTRRYVGIWYNQIPQLTLVWVANRNHPLNDTSGTLALDLHGNVIVFTPTQTISLWSTNTTIRSNDDVSIQLSNTGNLALIQPQTQKVIWQSFDYPSNVFLPYMKLGVNRRTGLSWFLTSWKALDDPGTGSFTSRIDPTGYPQLILYEGKVPRWRAGPWTGRRWSGVPEMTRSFIINTSYVDNSEEVSLTNGVTVDTVLMRMTLDESGLVHRSTWNQHEKKWNEFWSAPIEWCDTYNRCGLNSNCDPYDAEQFQCKCLPGFKPRSEENWFYRDASGGCIRKRSNATCRAGEGFVKVARVKVPDTSIAHVDKNMSLEACEQACLNNCNCTAYTSANEMTGTGCMMWLGDLIDTRTYASAGQDLYVRVDAIELAQYAQKSKTHPTKKVIAIVVVSFVALVVLVTSLFYLWDVVRKNKERSRTLSFNFIGELPNSKEFDESRTSSDLPVFDLLTIAKATDHFSFTNKLGEGGFGAVYKGKLTNGEEIAVKRLAKNSGQGVGEFKNEVNLIAKLQHRNLVKILGYCVKNEEKMIVYEYLPNKSLDTYIFDETKSGFLDWKKRFEIICGIARGILYLHEDSRLKIIHRDLKASNILLDANLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLVLEMITGKKNTNYDSSHLNLVGHVWELWKLDSVMELVDSSLEESSCGYKIIIRCLQIGLLCVQEDPTDRPTMSTVIFMLGSEVSLPSPKKPAFILKRKYNSGDPSTSTEGANSVNDLTISIIHAR* 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7126345 7129707 - CsaV3_1G011490.1 Csa01g01149 515646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01149 838 Pfam Domain of unknown function (DUF3403) 795 838 IPR021820 GO:0004674
Csa01g01149 838 CDD STKc_IRAK 528 792 - -
Csa01g01149 838 Gene3D - 31 156 IPR036426 -
Csa01g01149 838 Gene3D Phosphorylase Kinase; domain 1 496 597 - -
Csa01g01149 838 CDD B_lectin 39 159 IPR001480 -
Csa01g01149 838 ProSiteProfiles Protein kinase domain profile. 522 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01149 838 PANTHER - 23 835 - -
Csa01g01149 838 Pfam Protein tyrosine and serine/threonine kinase 523 789 IPR001245 GO:0004672|GO:0006468
Csa01g01149 838 ProSiteProfiles Bulb-type lectin domain profile. 32 156 IPR001480 -
Csa01g01149 838 ProSitePatterns Protein kinases ATP-binding region signature. 528 550 IPR017441 GO:0005524
Csa01g01149 838 PIRSF SRK 3 838 IPR024171 GO:0004674
Csa01g01149 838 SUPERFAMILY Protein kinase-like (PK-like) 500 792 IPR011009 -
Csa01g01149 838 ProSiteProfiles PAN/Apple domain profile. 350 430 IPR003609 -
Csa01g01149 838 Gene3D Transferase(Phosphotransferase) domain 1 598 799 - -
Csa01g01149 838 Pfam D-mannose binding lectin 81 185 IPR001480 -
Csa01g01149 838 SMART ntp_6 351 429 IPR003609 -
Csa01g01149 838 SMART blect_4 38 159 IPR001480 -
Csa01g01149 838 SMART serkin_6 522 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01149 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Csa01g01149 838 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 190 IPR036426 -
Csa01g01149 838 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 23 835 - -
Csa01g01149 838 ProSiteProfiles EGF-like domain profile. 292 330 IPR000742 -
Csa01g01149 838 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544
Csa01g01149 838 CDD PAN_AP_plant 351 429 - -
Csa01g01149 838 Pfam PAN-like domain 350 415 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01147 Csa-Chr1:7111962 Csa01g01149 Csa-Chr1:7126345 5.60E-41 dispersed
Csa01g01149 Csa-Chr1:7126345 Csa03g04115 Csa-Chr3:36063471 0 dispersed
Csa01g01148 Csa-Chr1:7120780 Csa01g01149 Csa-Chr1:7126345 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77781 PF07714 PK_Tyr_Ser-Thr 1.10E-49 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01149 - - csv:116402676 1684.85