Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01152 ATGAGATTCAACTTCACCCTCAATCGTTTGTTTTTGCTCTGTTTCACACCTCTCTTTCTCAGACACTCCATCGCAGTCGACATCTTAAAAGCAGGGCAATCCTTTAACGACACCCAAATAATTGTTTCAGCCGACGAGAAGTTTGAATTGGGTTTCTTCACTCACTCCAAGTCCTCCGATTTCAAGTATTTAGGAATTTGGTATAAAAGCCTTCCTGACTATGTTGTTTGGGTCGCAAACAGAGACAACCCAATTCTAAACTCTTCTGCTACTCTGAAATTCAATACAAATGGAAACTTAATTCTCGTCAATCAAACAGGTCAAGTTTTTTGGTCTTCCAATTCAACATCACTTCAAGATCCAATTGCTCAACTCCTAGATACAGGTAATTTCGTGCTAAGAGGTTCAAATTCAAGATCTGAAGATTATGTGTGGCAGAGTTTTGACTATCCCTCTGATACTCTGTTACCGGGAATGAAACTCGGATGGGACTCCAAAACAGGGCTTAATCGAAAGTTAACATCAAGAAAAAGTCAAAACGATCTGTCCTCTGGAGAGTTCAGTTATGAAGTCAACTTAGATGGGCTTCCTGAAATTGTGGTTCGTAAAGGAAACATGACGATGTTTAGAGGAGGGGCTTGGTTTGGCAATGGCTTTACTCGAGGTCGATCCAAGGGAGGGATTTTCAACTATAATTCTTCATTTGAGATATCCTTTTCATATACTGCCTTAACTAATGATGCATACAGAGCTGTATTGGATTCAAGTGGGTCTGTTATATACTCTGTTTGGAGTCAAGAGGAAAACAGATGGCGCACAACATACACGTTCGAAGGATCTGGCTGCGACGACTACGATTTATGTGGGAGTTTTGGCATTTGTAGCTCTGGTTTAGTTGCAAGCTGTGGTTGTTTAGATGGGTTTGAACAAAAATCAGCTCAAAATTATTCAGATGGGTGTTTTAGAAAGGATGAAAAAATTTGTAGAAAAGGAGAGGGATTTAGAAAGATGAGTGATGTGAAATGGCCAGATTCGACAGGGAACTTAGTGAAATTAAAAGTGGGTATTAAAAATTGTGAGACAGAGTGTTTGAATGATTGTTCTTGTTTGGCCTATGGCATACTTTCACTTCCTAATATTGGGCCTGCTTGTGCCACATGGTTTGACAAATTGCTTGATATTAGATTTGCTCGTGATGTTGGAACTGGAGATGATCTGTTTTTGAGAGAGGCTGCATCAGAATTAGAACAGAGTGAAAGGAAGAGTACAATAGTTCCAGTGCTTGTGGCAAGCATATCAATATTTATCTTCTTGGCTTTAATCAGCCTTTTGATCATTAGGAATGTAAGAAGAAGAGCTAAAGATAATGGAGTTACTTTCACTGAGGGTCTAATTCATGAGAGTGAACTTGAGATGTCGATTACGAGAATTGAAGCTGCTACGAACAATTTCTCAATTTCTAATAAGATAGGGGAAGGAGGTTTTGGACCTGTTTATAAGGGAAGACTCCCATTTGGGCAAGAAATTGCAGTAAAGAAGCTAGCAGAAAGATCTCGTCAAGGATTGGAGGAGTTTAAAAATGAGGTTCTTTTGATTTCCCAACTTCAACATCGAAATCTTGTCAAACTTCTTGGTTTCTGCATCCACAAGGAAGAAACATTACTTATTTACGAATACATGCCTAATAAAAGTTTGGACTACTTGCTGTTTGATAATGGAAGACGTTCTTTACTCAATTGGCAAATGAGAATTGATATCATAATTGGTATAGCTCGAGGACTTCTTTATCTTCATCGAGATTCAAGACTTCGAATCATACATAGAGATCTTAAAGCTGCAAATATATTATTAGATAGGGAAATGAAGCCAAAGATTTCAGATTTTGGCACTGCACGCATGTTTGGTGAATATCAAATGGAAACAAAAACAAAAAGAGTTATTGGAACCTATGGTTATATGTCTCCAGAATATGCACTCGACGGATGTTTTTCATTGAAGTCAGATGTATTTAGCTTTGGAGTAATTCTATTGGAAATAGTTAGTGGTAAAAAGAACAGAGGCTTCTTCCATACAGATCATCAACTAAATCTTCTTGGACATGCTTGGAAGCTTTGGGATGAACAAAATGCTCTGGAGTTAATGGATGCATCATTGGAGGATGAATTCCAACCTTCTGAAGCCTTGCAATGCATTCAAGTAGGGCTTTTGTGTGTTCAACAGAATCCTGATGAAAGACCGACTATGTGGTCAGTACTTTCGATGTTGGAGGGTGAGAACGTGCTCCTATCTCATCCTAAACAACCTGGATTTTACATGGAAAGAATGTTCTCTAAGCACGATAAATTATCGGCCGAAACCTCAACTTCGAACGAAGTGACAGTTACATCGATCCGTGGTCGTTAG 2403 38.74 MRFNFTLNRLFLLCFTPLFLRHSIAVDILKAGQSFNDTQIIVSADEKFELGFFTHSKSSDFKYLGIWYKSLPDYVVWVANRDNPILNSSATLKFNTNGNLILVNQTGQVFWSSNSTSLQDPIAQLLDTGNFVLRGSNSRSEDYVWQSFDYPSDTLLPGMKLGWDSKTGLNRKLTSRKSQNDLSSGEFSYEVNLDGLPEIVVRKGNMTMFRGGAWFGNGFTRGRSKGGIFNYNSSFEISFSYTALTNDAYRAVLDSSGSVIYSVWSQEENRWRTTYTFEGSGCDDYDLCGSFGICSSGLVASCGCLDGFEQKSAQNYSDGCFRKDEKICRKGEGFRKMSDVKWPDSTGNLVKLKVGIKNCETECLNDCSCLAYGILSLPNIGPACATWFDKLLDIRFARDVGTGDDLFLREAASELEQSERKSTIVPVLVASISIFIFLALISLLIIRNVRRRAKDNGVTFTEGLIHESELEMSITRIEAATNNFSISNKIGEGGFGPVYKGRLPFGQEIAVKKLAERSRQGLEEFKNEVLLISQLQHRNLVKLLGFCIHKEETLLIYEYMPNKSLDYLLFDNGRRSLLNWQMRIDIIIGIARGLLYLHRDSRLRIIHRDLKAANILLDREMKPKISDFGTARMFGEYQMETKTKRVIGTYGYMSPEYALDGCFSLKSDVFSFGVILLEIVSGKKNRGFFHTDHQLNLLGHAWKLWDEQNALELMDASLEDEFQPSEALQCIQVGLLCVQQNPDERPTMWSVLSMLEGENVLLSHPKQPGFYMERMFSKHDKLSAETSTSNEVTVTSIRGR* 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7146369 7209032 - CsaV3_1G011520.1 Csa01g01152 515649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01152 800 SUPERFAMILY Protein kinase-like (PK-like) 469 756 IPR011009 -
Csa01g01152 800 Gene3D Transferase(Phosphotransferase) domain 1 560 764 - -
Csa01g01152 800 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 17 796 - -
Csa01g01152 800 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 181 IPR036426 -
Csa01g01152 800 Pfam Protein tyrosine and serine/threonine kinase 486 754 IPR001245 GO:0004672|GO:0006468
Csa01g01152 800 CDD PAN_AP_plant 328 411 - -
Csa01g01152 800 Pfam PAN-like domain 328 394 IPR003609 -
Csa01g01152 800 Gene3D Phosphorylase Kinase; domain 1 446 559 - -
Csa01g01152 800 ProSiteProfiles PAN/Apple domain profile. 328 411 IPR003609 -
Csa01g01152 800 SMART blect_4 32 151 IPR001480 -
Csa01g01152 800 SMART serkin_6 484 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01152 800 PIRSF SRK 1 800 IPR024171 GO:0004674
Csa01g01152 800 Gene3D - 22 148 IPR036426 -
Csa01g01152 800 ProSiteProfiles Protein kinase domain profile. 484 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01152 800 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 796 - -
Csa01g01152 800 Pfam S-locus glycoprotein domain 209 311 IPR000858 GO:0048544
Csa01g01152 800 CDD STKc_IRAK 490 757 - -
Csa01g01152 800 ProSiteProfiles Bulb-type lectin domain profile. 26 146 IPR001480 -
Csa01g01152 800 Pfam D-mannose binding lectin 75 177 IPR001480 -
Csa01g01152 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Csa01g01152 800 CDD B_lectin 39 151 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01152 Csa-Chr1:7146369 Csa01g01159 Csa-Chr1:7185254 0 dispersed
Csa01g01160 Csa-Chr1:7193508 Csa01g01152 Csa-Chr1:7146369 0 dispersed
Csa01g01152 Csa-Chr1:7146369 Csa01g01153 Csa-Chr1:7147005 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77782 PF07714 PK_Tyr_Ser-Thr 3.10E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01152 - - csv:116402680 1464.51