Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01153 ATGGGAGAACGGATTTGCAGGTGCAGTAAGGTTTCAGCTTTTTTAACTTTTTTGACAACCATAGCTCTGTTTTCAAGAAAATTATCAGCAATCGATACAATAAAAGAAGGGGAATTGTTAAGCGGCAGCACCGAGATATTAGTTTCATCTCAACAGAACTTTGTATTGGGAATCTTCAATCCCCAAGGCTCCAAATTTCAGTACTTAGGAATATGGTACAAGAACAACCCACAGACAATCGTATGGGTAGCAAACAGAGACAACCCACTTGTAAACTCCTCTGCCAAATTAACAGTCAACGTAGAAGGAAGTATCAGGCTTCTCAACGAAACAGGTGGAGTTTTATGGTCTTCCCCGTCTCTAGGATCCAGGAAACTACTCATCGTTCAGCTGCTAAACACTGGTAATCTGGTCGTAACCGAATCTGGGTCACAGAATTATTTGTGGCAGAGTTTTGATTATCCATCTGATACTCTGTTAACGGGAATGAAACTGGGTTGGGACTTGAAATCCGGTCTAAACCGGAAGTTAACGTCTTGGAAAAGCTCAAACGATCCGTCGTCTGGGGGTTTCACCTACAGCGTTGAAACAGATGGGCTTCCCCAATTTGTAATTCGCGAAGGACCTATCATACTTTTTCGAGGTGGCCCTTGGTACGGCAATAGGTTTAGTGGAAGTGGTCCACTCAGAGATACCGCTATTTATTCCCCGAAGTTCGATTATAATGCTACCGCAGCTTTATTTTCATACGATGCTGCGGATAATCTCTTTGTGAGACTTACACTGAACGCGGCTGGGTATGTTCAACAGTTTTATTGGGTCGATGATGGAAAATATTGGAACCCTTTGTATACAATGCCGGGAGATCGATGCGATGTTTATGGACTGTGTGGGGATTTTGGTGTTTGTACGTTTTCACTCACAGCAGAATGTGATTGTATGGTTGGGTTTGAACCCAAGTCACCTAATGATTGGGAAAGGTTTAGATGGACTGATGGGTGCGTTAGAAAGGACAATCGAACCTGTAGAAATGGAGAGGGGTTTAAAAGAATCAGTAGTGTGAAATTGCCAGATTCCTCAGGGTATTTGGTGAATGTTAATACAAGCATTGATGATTGTGAGGCGTCGTGTTTAAACAACTGCTCTTGCTTGGCTTATGGAATAATGGAGCTTCCAACAGGCGGCTATGGCTGTGTTACTTGGTTTCATAAACTGGTGGATGTTAAATTCGTTCTTGAAAATGGACAGGATCTCTATATAAGAGTGGCAGCTTCAGAACTAGACACGACCAAGAAGAAGCTTTTGGTTGCAATTTGTGTGTCTTTGGCTTCATTTCTAGGCTTGTTGGCTTTTGTCATTTGCTTTATCCTTGGGCGTCGAAGGAGAGTTAGAGATAATATGGTCTCTCCTGATAACTCTGAAGGTCATATTCAATCTCAAGAAAACGAAGTGGAGCCAATCTTTGATTTTACCACAATCGAGATAGCAACGAATGGTTTCTCTTTTTCGAATAAGATAGGGGAAGGTGGTTTTGGTCCTGTATACAAGGGAAAGCTTTCTTGTGGACAAGAGATTGCAGTAAAGAGACTTGCAGAGGGCTCTGGCCAAGGCCAAAGTGAGTTCAAAAATGAGGTTTTGTTGATTTCACAACTTCAGCATCGAAATCTTGTAAAGCTTCTTGGTTTCTGCATTCACCAAGAAGAAACATTGCTGGTCTATGAGTATATGCAAAATAAAAGTCTAGACTACTTCCTCTTCGATAATCAGAGGCGATGTTTACTCAATTGGCAAAAGAGATTGGATATCATTATTGGGATAGCTCGAGGACTTCTTTATCTTCATAGAGATTCAAGGCTTAGAATAATACACAGAGATCTCAAAGTAAGTAATATATTACTTGACAATGAAATGACTCCAAAAATTTCAGACTTTGGTATGGCACGCATGTTTGGGGAAGGTCAAACTGTGACACAAACCAAAAGAGTTGTTGGGACCTA 1997 41.31 MGERICRCSKVSAFLTFLTTIALFSRKLSAIDTIKEGELLSGSTEILVSSQQNFVLGIFNPQGSKFQYLGIWYKNNPQTIVWVANRDNPLVNSSAKLTVNVEGSIRLLNETGGVLWSSPSLGSRKLLIVQLLNTGNLVVTESGSQNYLWQSFDYPSDTLLTGMKLGWDLKSGLNRKLTSWKSSNDPSSGGFTYSVETDGLPQFVIREGPIILFRGGPWYGNRFSGSGPLRDTAIYSPKFDYNATAALFSYDAADNLFVRLTLNAAGYVQQFYWVDDGKYWNPLYTMPGDRCDVYGLCGDFGVCTFSLTAECDCMVGFEPKSPNDWERFRWTDGCVRKDNRTCRNGEGFKRISSVKLPDSSGYLVNVNTSIDDCEASCLNNCSCLAYGIMELPTGGYGCVTWFHKLVDVKFVLENGQDLYIRVAASELDTTKKKLLVAICVSLASFLGLLAFVICFILGRRRRVRDNMVSPDNSEGHIQSQENEVEPIFDFTTIEIATNGFSFSNKIGEGGFGPVYKGKLSCGQEIAVKRLAEGSGQGQSEFKNEVLLISQLQHRNLVKLLGFCIHQEETLLVYEYMQNKSLDYFLFDNQRRCLLNWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKVSNILLDNEMTPKISDFGMARMFGEGQTVTQTKRVVGTX 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7147005 7149552 - CsaV3_1G011530.1 Csa01g01153 515650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01153 666 Pfam D-mannose binding lectin 79 181 IPR001480 -
Csa01g01153 666 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
Csa01g01153 666 SMART ntp_6 343 422 IPR003609 -
Csa01g01153 666 CDD PAN_AP_plant 339 423 - -
Csa01g01153 666 ProSiteProfiles Bulb-type lectin domain profile. 31 152 IPR001480 -
Csa01g01153 666 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 665 - -
Csa01g01153 666 Gene3D Transferase(Phosphotransferase) domain 1 576 666 - -
Csa01g01153 666 CDD B_lectin 39 155 IPR001480 -
Csa01g01153 666 SMART blect_4 38 155 IPR001480 -
Csa01g01153 666 SMART serkin_6 500 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01153 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Csa01g01153 666 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544
Csa01g01153 666 Gene3D - 27 152 IPR036426 -
Csa01g01153 666 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 186 IPR036426 -
Csa01g01153 666 ProSiteProfiles Protein kinase domain profile. 500 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01153 666 Gene3D Phosphorylase Kinase; domain 1 463 575 - -
Csa01g01153 666 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 23 665 - -
Csa01g01153 666 SUPERFAMILY Protein kinase-like (PK-like) 477 665 IPR011009 -
Csa01g01153 666 Pfam PAN-like domain 342 408 IPR003609 -
Csa01g01153 666 Pfam Protein tyrosine and serine/threonine kinase 501 658 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01153 Csa-Chr1:7147005 Csa01g01158 Csa-Chr1:7179029 0 dispersed
Csa01g01161 Csa-Chr1:7197333 Csa01g01153 Csa-Chr1:7147005 1.22E-151 dispersed
Csa01g01152 Csa-Chr1:7146369 Csa01g01153 Csa-Chr1:7147005 0 tandem
Csa01g01153 Csa-Chr1:7147005 Csa01g01154 Csa-Chr1:7151218 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77783 PF07714 PK_Tyr_Ser-Thr 1.10E-34 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01153 - - csv:105434439 1359.74