Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01155 ATGGTTCTGTTTCCAAGAAAATCATTTGCAATTGACAGCATAAAAGCAGGGGAATCCATCAATGGCAGTAACCAAATATTAGTTTCAGCTCAACAGAAGTTTGTGCTGGGAATTTTCAATCCTAAAGACTCCATATTTCACTACTTGGGAATATGGTACATGAACATCCCACAAACGGTTGTGTGGGTAACAAACAGAGACAACCTACTTTTAAATTCCTCTGTCATACTAGCATTCAAGGGAGGAAACCTGGTTCTTCAGAATGAAAGAGAGGGAATTATATGGTCTTCCATTTCTTCAGAATTTGTTAAGGTACCAGTTGCTCAACTACTAGATAATGGTAATTTGGTTATAAGAGAATCCGGGTCTGAAAATTATGTGTGGCAGAGTTTTGATTACCCTTCTGATACTCTGTTACCGGGCATGAAACTCGGTTGGGACTCAAAAACCGGTATGAAGTGGAAGTTAACGTCATGGAAGAGCTTGAACGATCCGTCATCTGGGGATTTCACTTTTGGTATGGACCCTGATGGGCTTCCCCAGTTTGAAACTCGCAGAGGAAACATCACAACATACAGGGATGGCCCATGGTTTGGCAGTAGGTTTAGTCGCAGTTCTTTTTTTAGTGAAGTGGAAATTACTTCACCACAGTTCGATTATAATGCGGAAGGAGCATTCTTTTCATACGAGTCTGTGAACAATCTCACTGTAATATATGCACTGAACGCACAAGGCTACTTTCAAGAATTGTATTGGAAAGATGATGCAAATGATTGGTTCTCTTTGAATGAATTACCAGGAGATGGCTGTGATGACTACGGACACTGTGGAAATTTTGGTATTTGTACATTTTCCTTCATACCCCTCTGTGATTGCGTTCATGGGCATCGACCAAAATCTCCAGATGATTGGGGAAAGCATAACTGGTCAGGTGGCTGCGTTATAAGAGACAATCGAACCTGCAAAAATGGAGAGGGGTTTAAAAGAATCAGCAATGTGAAATTGCCAGATTCTTCATGGGATTTGGTGAATGTTAATCCGAGCATTCATGACTGCGAAGCGGCATGCTTGAGTAATTGCTCTTGCTTGGCCTATGGAATAATGGAGCTTCCCACTGGTGGCAATGGCTGCATCACATGGTTTAAGAAGTTGGTGGATATTAGGATCTTTCCTGATTATGGACAGGATATCTATGTGAGATTAGCTGCTTCAGAATTAGTTGTAATTGCAGATCCTTCAGAATCAGAATCGCCTAAGAGGAAGCTTATAGTTGGCCTGAGTGTGTCTGTTGCTTCACTGATAAGCTTCTTGATTTTTTTTGCTTGCTTTATCTATTGGCGTAGGAGGGCTGAGGGTAATGAGGTTGAGGCTCAAGAGGGTGACGTTGAGTCGCCACTCTATGATTTTACGAAGATTGAGACTGCCACAAATTATTTTTCTTTTTCAAATAAGATTGGCGAAGGTGGCTTTGGTCCTGTGTACAAAGGAATGCTTCCATGTGGACAAGAAATTGCAGTAAAAAGACTGGCAGAGGGTTCAAGCCAAGGGCAAACCGAGCTAAGAAACGAGGTTCTATTGATCTCCAAACTGCAACATCGAAATCTCGTCAAGCTACTTGGTTTCTGCATTCATCAACAAGAAACATTGTTGGTCTATGAATATATGCCAAACAAAAGTCTTGACTATTTTCTATTTGATGACAAGAAGCGATCTTTACTTGGTTGGAAAAAGAGGCTGGATATTATAATTGGAATAGCTCGAGGTCTTCTCTATCTCCACCGAGACTCGAGGCTTATAATTATACATAGAGATCTCAAAGTGAGTAACATCTTACTTGATAATGAAATGAATCCAAAAATTACGGACTTCGGTATGGCGCGTATGTTTGGTGAAGACCAGGCTATGACACAAACGGAAAGAGTTGTTGGGACCTATGGTTATATGTCTCCTAAATATGTAGTCGATGGATATTTTTCAATGAAATCAGATATCTTTAGTTTTGGCGTTATTCTTTTAGAAATAGTTAGTGGTAAGAAGAATAGAGGCTTCTTCCATCCCGACCATCAGCTAAATCTTCTTGGACATGCATGGAAACTTTGGGATGAAGACAACGCTTTGGAATTAATGGATGAAACATTGAAGGATCAATTCCAAAACTCTGAAGCCCAACGATGCATTCAAGTAGGACTTTTGTGCGTTCAAGAGAATCCTAATGAAAGGCCAGCTATGTGGTCAGTACTTACAATGTTAGAGAGTGAAAATATGGTATTATCTCAACCTAAACAGCCTGGATTTTACACAGAAAGAATGATTTTTAAGACCCATAAATTACCAGTGGAAACCTCTTGTAGTTCCAATCAAGTGACCATTACACAGCTGGATGGTCGATAA 2391 40.23 MVLFPRKSFAIDSIKAGESINGSNQILVSAQQKFVLGIFNPKDSIFHYLGIWYMNIPQTVVWVTNRDNLLLNSSVILAFKGGNLVLQNEREGIIWSSISSEFVKVPVAQLLDNGNLVIRESGSENYVWQSFDYPSDTLLPGMKLGWDSKTGMKWKLTSWKSLNDPSSGDFTFGMDPDGLPQFETRRGNITTYRDGPWFGSRFSRSSFFSEVEITSPQFDYNAEGAFFSYESVNNLTVIYALNAQGYFQELYWKDDANDWFSLNELPGDGCDDYGHCGNFGICTFSFIPLCDCVHGHRPKSPDDWGKHNWSGGCVIRDNRTCKNGEGFKRISNVKLPDSSWDLVNVNPSIHDCEAACLSNCSCLAYGIMELPTGGNGCITWFKKLVDIRIFPDYGQDIYVRLAASELVVIADPSESESPKRKLIVGLSVSVASLISFLIFFACFIYWRRRAEGNEVEAQEGDVESPLYDFTKIETATNYFSFSNKIGEGGFGPVYKGMLPCGQEIAVKRLAEGSSQGQTELRNEVLLISKLQHRNLVKLLGFCIHQQETLLVYEYMPNKSLDYFLFDDKKRSLLGWKKRLDIIIGIARGLLYLHRDSRLIIIHRDLKVSNILLDNEMNPKITDFGMARMFGEDQAMTQTERVVGTYGYMSPKYVVDGYFSMKSDIFSFGVILLEIVSGKKNRGFFHPDHQLNLLGHAWKLWDEDNALELMDETLKDQFQNSEAQRCIQVGLLCVQENPNERPAMWSVLTMLESENMVLSQPKQPGFYTERMIFKTHKLPVETSCSSNQVTITQLDGR* 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7158934 7162183 + CsaV3_1G011550.1 Csa01g01155 515652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01155 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Csa01g01155 796 Pfam D-mannose binding lectin 59 160 IPR001480 -
Csa01g01155 796 ProSiteProfiles PAN/Apple domain profile. 321 402 IPR003609 -
Csa01g01155 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 165 IPR036426 -
Csa01g01155 796 SMART blect_4 18 134 IPR001480 -
Csa01g01155 796 SMART ntp_6 322 401 IPR003609 -
Csa01g01155 796 Gene3D - 8 131 IPR036426 -
Csa01g01155 796 Pfam Domain of unknown function (DUF3403) 752 796 IPR021820 GO:0004674
Csa01g01155 796 SUPERFAMILY Protein kinase-like (PK-like) 463 774 IPR011009 -
Csa01g01155 796 SMART serkin_6 479 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01155 796 Gene3D Transferase(Phosphotransferase) domain 1 555 763 - -
Csa01g01155 796 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 7 792 - -
Csa01g01155 796 Pfam Protein tyrosine and serine/threonine kinase 480 748 IPR001245 GO:0004672|GO:0006468
Csa01g01155 796 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 792 - -
Csa01g01155 796 ProSiteProfiles Bulb-type lectin domain profile. 11 131 IPR001480 -
Csa01g01155 796 CDD B_lectin 20 134 IPR001480 -
Csa01g01155 796 PIRSF SRK 1 796 IPR024171 GO:0004674
Csa01g01155 796 Pfam PAN-like domain 321 387 IPR003609 -
Csa01g01155 796 Gene3D Phosphorylase Kinase; domain 1 445 554 - -
Csa01g01155 796 ProSiteProfiles Protein kinase domain profile. 479 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01155 796 CDD STKc_IRAK 485 751 - -
Csa01g01155 796 CDD PAN_AP_plant 318 402 - -
Csa01g01155 796 Pfam S-locus glycoprotein domain 192 300 IPR000858 GO:0048544
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01155 Csa-Chr1:7158934 Csa01g01157 Csa-Chr1:7173741 0 dispersed
Csa01g01154 Csa-Chr1:7151218 Csa01g01155 Csa-Chr1:7158934 0 tandem
Csa01g01155 Csa-Chr1:7158934 Csa01g01156 Csa-Chr1:7165615 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77784 PF07714 PK_Tyr_Ser-Thr 1.90E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01155 - - csv:101214505 1538.09