Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01157 ATGACCATGGCTTTTTTATCAAGAAAATCATTGGCAATTGATAGCATAAAAGCAGGGGAATCCATCAATGGAAATACCCAGATTTTAGTTTCAGCTCAACAGAAGTTCGTGCTGGGAATTTTCAATCCTAAAGACTCCAAATTTGGTTACTTGGGAATATGGTACAAGAACATCCCACAAACAGTTGTGTGGGTAGCAAACAGAGACAGCCCACTTGTAGATTCCTCTGCCAGATTAACACTCAAAGGACAAAGCCTGGTTCTTGAGAATGAAAGCGATGGAATTCTATGGTCTCCCACTTCTTCAAAATTCCTGAAAGATCCAATAGCTCAACTACTTGATAATGGTAATTTGGTTATAAGAGAATCTGGGTCTGAACATTATGTGTGGCAGAGTTTTGATTACCCTTCTGATAATCTGTTACCTGGCATGAAAGTGGGTTGGGACTTGAAAACCAGGATGAACTGGAAGTTAACGTCATGGAAAAGCTCGAATGATCCGTCTTCAGGGGATTTCACTTATGGTATGGACCCTGCTGGGCTTCCCCAGCTTGAAACTCGCAGAGGAAATGTAACAACATACAGGGGTGGCCCATGGTTCGGTAGGAGGTTTAGTGGCACTACCCCTTTTAGAGATACAGCTATTCATTCTCCACGGTTCAATTATAGTGCGGAAGGAGCATTCTATTCATACGAGTCTGCAAAAGATCTTACTGTAAGATATGCACTGAGCGCAGAAGGGAAATTCGAACAATTTTATTGGATGGATGATGTAAATGATTGGTACCTTCTGTATGAATTACCGGGAGATGCCTGCGATTACTACGGACTCTGCGGAAATTTTGGTGTTTGTACATTTTCTACCATACCGCGCTGCGATTGCATTCATGGGTATCAACCAAAATCGCCAGACGATTGGAATAAGCGTCGCTGGATAGGAGGCTGCGTTATAAGGGACAATCAAACCTGCAAAAATGGAGAGGGGTTTAAAAGAATCAGCAATGTAAAATTGCCAGATTCTTCAGGGGATTTGGTGAATGTTAATATGAGCATTCATGACTGCAAAGCGGCGTGCTTGAGTAATTGCTCTTGCTTGGCCTATGGAATGATGGAGCTTTCCACAGGAGGATGTGGTTGCCTCACATGGTTTAATAAGTTGGTGGATATTAGAATCCTTCCTGATAATGGGCAGGATATCTATGTGAGGTTGGCTGCTTCAGAATTAGAATCGGATAAAAGGAAGCTTACAGTTGTGCTTTGTCTGTCTGTTGCGTCACTGATAAGCTTCTTGATTTTTGTTGCTTGCTTTATCTTTTGGCGTAGAAGGACGATTAAGGGTAATGAGGTTCAGTCTCATGAAAACGAAGCTGAGATGCCACTTTATGATTTTTCCATGCTCGTAAATGCCACAAATGATTTTTCTCTCTCAAATAAGATTGGGGAAGGTGGTTTCGGACCCGTCTACAAAGGAGTGCTTCCATGTGGACAAGAAATTGCAGTAAAAAGACAGGCAGAGGGTTCAAGCCAAGGGCAAACGGAGCTAAGAAACGAGGTTCTATTGATCTCCAAACTCCAACATCGTAATCTTGTCAAGCTGCTTGGTTTTTGCATTCATCAACAAGAAACATTGCTGGTCTATGAATATATGCCCAACAAAAGTCTTGACTATTTTCTCTTTGATAACAGGAAGAGATGTTTACTTAATTGGAAAAAGAGGTTGGATATTATAATTGGAATAGCTCGAGGTCTTCTCTATCTCCACCGAGATTCGAGGCTTATAATTATACATAGGGATCTCAAAGTGAGTAACATCTTACTGGATAACGAAATGAATCCAAAAATTTCAGACTTTGGTATGGCTCGCATGTTTGGTGAAGACCAAGCTATGACACGAACCAAAAGAGTTGTTGGGACCTATGGGTATATGTCTCCTGAATATGCAATCGACGGATATTTTTCAATGAAATCAGATATCTTCAGCTTTGGAGTTATTCTTTTAGAAATAGTCAGTGGTAAGAAGAATAGAGGCTTCTTCCATCCCGACCATCAACTAAATCTTCTTGGACATGCATGGAAACTGTGGTATGAAGGCAATGGTTTGGAATTAATGGATGAAACGTTGAAAGATCAGTTCCAAAAGTGTGATGCAGTACGATGCATTCAAGTAGGACTACTGTGCGTTCAAGAGAATCCTGATGAAAGACCAGCCATGTGGTCAGTACTATCAATGTTAGAGAGTGAAAATATGGTATTATCTGTACCTAAACAACCTGGATTTTACACAGAAAGAATGATTTCTAATACCCATAAATTACGAGCTGAGAGCTCTTGTACTTCCAATGAAGTGACCGTCACACTGCTGGATGGTCGTTAG 2373 40.96 MTMAFLSRKSLAIDSIKAGESINGNTQILVSAQQKFVLGIFNPKDSKFGYLGIWYKNIPQTVVWVANRDSPLVDSSARLTLKGQSLVLENESDGILWSPTSSKFLKDPIAQLLDNGNLVIRESGSEHYVWQSFDYPSDNLLPGMKVGWDLKTRMNWKLTSWKSSNDPSSGDFTYGMDPAGLPQLETRRGNVTTYRGGPWFGRRFSGTTPFRDTAIHSPRFNYSAEGAFYSYESAKDLTVRYALSAEGKFEQFYWMDDVNDWYLLYELPGDACDYYGLCGNFGVCTFSTIPRCDCIHGYQPKSPDDWNKRRWIGGCVIRDNQTCKNGEGFKRISNVKLPDSSGDLVNVNMSIHDCKAACLSNCSCLAYGMMELSTGGCGCLTWFNKLVDIRILPDNGQDIYVRLAASELESDKRKLTVVLCLSVASLISFLIFVACFIFWRRRTIKGNEVQSHENEAEMPLYDFSMLVNATNDFSLSNKIGEGGFGPVYKGVLPCGQEIAVKRQAEGSSQGQTELRNEVLLISKLQHRNLVKLLGFCIHQQETLLVYEYMPNKSLDYFLFDNRKRCLLNWKKRLDIIIGIARGLLYLHRDSRLIIIHRDLKVSNILLDNEMNPKISDFGMARMFGEDQAMTRTKRVVGTYGYMSPEYAIDGYFSMKSDIFSFGVILLEIVSGKKNRGFFHPDHQLNLLGHAWKLWYEGNGLELMDETLKDQFQKCDAVRCIQVGLLCVQENPDERPAMWSVLSMLESENMVLSVPKQPGFYTERMISNTHKLRAESSCTSNEVTVTLLDGR* 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7173741 7177121 - CsaV3_1G011570.1 Csa01g01157 515654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01157 790 Gene3D Transferase(Phosphotransferase) domain 1 549 755 - -
Csa01g01157 790 Gene3D Phosphorylase Kinase; domain 1 436 548 - -
Csa01g01157 790 CDD B_lectin 23 136 IPR001480 -
Csa01g01157 790 ProSiteProfiles PAN/Apple domain profile. 323 404 IPR003609 -
Csa01g01157 790 CDD PAN_AP_plant 320 404 - -
Csa01g01157 790 Pfam Protein tyrosine and serine/threonine kinase 474 742 IPR001245 GO:0004672|GO:0006468
Csa01g01157 790 Pfam Domain of unknown function (DUF3403) 746 790 IPR021820 GO:0004674
Csa01g01157 790 SUPERFAMILY Protein kinase-like (PK-like) 457 764 IPR011009 -
Csa01g01157 790 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 788 - -
Csa01g01157 790 Pfam D-mannose binding lectin 61 162 IPR001480 -
Csa01g01157 790 CDD STKc_IRAK 479 745 - -
Csa01g01157 790 PIRSF SRK 1 790 IPR024171 GO:0004674
Csa01g01157 790 ProSiteProfiles Protein kinase domain profile. 473 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01157 790 SMART serkin_6 473 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01157 790 Pfam S-locus glycoprotein domain 194 302 IPR000858 GO:0048544
Csa01g01157 790 Gene3D - 9 133 IPR036426 -
Csa01g01157 790 SMART ntp_6 324 403 IPR003609 -
Csa01g01157 790 ProSiteProfiles EGF-like domain profile. 268 304 IPR000742 -
Csa01g01157 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 62 167 IPR036426 -
Csa01g01157 790 ProSiteProfiles Bulb-type lectin domain profile. 13 133 IPR001480 -
Csa01g01157 790 Pfam PAN-like domain 323 389 IPR003609 -
Csa01g01157 790 SMART blect_4 20 136 IPR001480 -
Csa01g01157 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672|GO:0006468
Csa01g01157 790 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 9 788 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01155 Csa-Chr1:7158934 Csa01g01157 Csa-Chr1:7173741 0 dispersed
Csa01g01157 Csa-Chr1:7173741 Csa01g01159 Csa-Chr1:7185254 0 dispersed
Csa06g00605 Csa-Chr6:5129430 Csa01g01157 Csa-Chr1:7173741 7.20E-14 dispersed
Csa01g01156 Csa-Chr1:7165615 Csa01g01157 Csa-Chr1:7173741 0 tandem
Csa01g01157 Csa-Chr1:7173741 Csa01g01158 Csa-Chr1:7179029 0 tandem
Csa01g01157 Csa-Chr1:7173741 Csa06g03569 Csa-Chr6:28918339 0 wgd
Csa01g01157 Csa-Chr1:7173741 Csa07g00396 Csa-Chr7:2907579 5.01E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77785 PF07714 PK_Tyr_Ser-Thr 1.80E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01157 - - csv:105435152 1631.69