Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01158 ATGGATTCCCCTGCTTTTATGCTATCGATTGCTAATAATTTTCTTAGAAACATAGCTATGGCTGTCAAGAAGATTAGAAAAGTTGAAAGCTTGCAATTGCAAATCAGTTCTCCCATGGCTTCTTTCAAATCAAAGCAAAATGGAATACAGGATAACAATGACGATATTATATATCAATATAATATGTACTCATTCAAACATTACCGTCAAAAGATACATGATGATGATCCTGGTCAAAATGGCGAACTAATTGCTTTGAATTTGAAAGAAGCCATGAGAGAACTGATTAGCAAGTGCAAGCTTTTGGCTTTTCTTTTTCTCCTGACGACCATAGCTCTGTTTCCAACGAAATCACATGGAAAAGACAGCATAAAAGCAGGGGAATCCATCAATGGTAGTACCCAGATTTTAGTTTCAGCAAAACAGAACTTTGTATTGGGAATCTTCACTCCCCAAGGCTCCAAGTTTCAGTATTTGGGAATATGGTTCAACAACATCCCACAAACTATCGTGTGGGTCGCAAACAGAGACAACCCACTTGTAAATTCCTCTGGAAAGTTAGAATTCAGAAGAGGAAATATTGTTCTTCTCAACGAAACAGATGGAATTTTATGGTCTTCCATTTCTCCAGGAACACCGAAAGATCCAGTAGCTCAACTGTTAGATACAGGTAATTGGGTGGTAAGAGAATCTGGGTCTGAAGATTATGTGTGGCAGAGTTTCAATTACCCCTCCGATACTCTGTTACCGGGCATGAAACTGGGTTGGAGCTCCAAAACTGGCCTGAACCGGAAGTTAAGATCGTGGAAGAGCTTGAACGATCCGTCGTTTGGCGATTTCACATACAGTGTGGACCTAAATGGACTTCCCCAATTAGTAACTCGCGAAGGACTCATCATAACGTACCGGGGCGGCCCATGGTACGGTAATAGGTTTAGCGGTAGTGCTCCTCTCAGAGATACTGCAGTTTATTCACCAAAGTTTGTTTATTCCGCCGACGAAGTAACTTATTCAATCGTTACGACGAGTAGTCTCATTGTAAAGCTTGGATTGGACGCAGCTGGAATATTGCATCAAATGTATTGGGATGATGGTAGAAAAGATTGGTATCCTCTGTATACATTGCCAGGGGATCGTTGCGATGACTATGGTCTATGCGGGGATTTTGGTATTTGTACATTTTCCCTTACTCCGCAATGCAATTGTATGGTTGGGTTTGAACCTAAATCCCCTGATGATTGGAAAAGGTTTAGATGGTCAGATGGGTGCGTTAGAAAGGACAATCAAATTTGCAGAAATGGAGAAGGGTTTAAAAGAATACGTAGTGTGAAATTGCCAGATTCTTCAGGGTATTTGGTGAATGTTAATACAAGCATTGATGATTGTGAGGTGGCGTGTTTAAACAACTGTTCTTGCTTGGCCTATGGAATTATGGAGCTTTCTACAGGCGGCTATGGCTGTGTCACTTGGTTTCAGAAATTGATTGATGCTAGATTTGTTCCTGAAAATGGGCAGGATATCTATGTGAGAGTGGCAGCTTCTGAATTAGACTCGAGCAATAGGAAGGTTGTAATTGCTGTTAGTGTGTCTGTGGCTTCATTGATTGGCTTCTTGGTTTTAGTGGTTTGTTTTATCCTGTGGCGTAGAAGGAAAGTTAAAGGTAAGGTTCAAAGTCAAGAGAATGAAGTTGAGATGCCACTCTATGATTTTACAACGATTGAGATTGCCACAAATCATTTTTCTTTTTCCAATAAGATAGGGGAAGGTGGTTTTGGTCCTGTATACAAGGGAAAGCTTCCATGTGGACAAGAAATTGCAGTAAAAAGGTTGGCAGAGGGATCCGGTCAAGGACAAAGCGAGTTCAAGAATGAGATTTTATTGATTTCTCAACTTCAACATCGAAATCTTGTCAAGCTACTTGGTTTCTGCATTCATCATGAAGAAACATTACTGATTTATGAATACATGCCAAACAAAAGTCTAGACTACTTCCTCTTTGATGGTGAGGGGCGATCTTTACTCAATTGGCAAAAGAGATTGGACATTATTATTGGAATAGCTCGAGGACTTCTTTATCTTCACAGAGATTCTAGGCTCAGAATCATACATCGAGATCTTAAAGTGAGTAATATATTACTAGATAATGAAATGAATCCAAAGATTTCAGATTTTGGAATGGCACGTATGTTTCCTGAGGACCAAACTATGACAAAAACGCAAAGAGTTGTTGGGACCTTTGGCTATATGTCTCCCGAATATGCACTCGATGGATGTTTTTCGTTGAAATCTGATGTATTCAGCTTTGGAGTTATTCTTTTGGAAATAATAAGTGGTAAGAAGAATAGAGGGTTCTTCCATACAGATCATCAACTTAATCTTCTTGGACATGCATGGAAGCTTTGGGACGAAGGGAATCCTTTGGAATTAATGGATGCAACATTGAAAGATCAATTCCAACCTTCTGAAGCACTGAGATGCATTCAAGTAGGGCTTCTATGCGTTCAACAGGATCCAAATGAGAGACCAACTATGTGGTCTGTTCTTTCGATGCTAGAAAGTGAAAATATGTTATTATCTCATCCTCAACGACCTGGATTTTACACTGAACGAATGGTTTTGAAGACGGATAAATCGTCCACTGATATCTCTTCTTCCAATGAAGTAACCGTTACATTACTACATGGTCGTTAG 2691 39.76 MDSPAFMLSIANNFLRNIAMAVKKIRKVESLQLQISSPMASFKSKQNGIQDNNDDIIYQYNMYSFKHYRQKIHDDDPGQNGELIALNLKEAMRELISKCKLLAFLFLLTTIALFPTKSHGKDSIKAGESINGSTQILVSAKQNFVLGIFTPQGSKFQYLGIWFNNIPQTIVWVANRDNPLVNSSGKLEFRRGNIVLLNETDGILWSSISPGTPKDPVAQLLDTGNWVVRESGSEDYVWQSFNYPSDTLLPGMKLGWSSKTGLNRKLRSWKSLNDPSFGDFTYSVDLNGLPQLVTREGLIITYRGGPWYGNRFSGSAPLRDTAVYSPKFVYSADEVTYSIVTTSSLIVKLGLDAAGILHQMYWDDGRKDWYPLYTLPGDRCDDYGLCGDFGICTFSLTPQCNCMVGFEPKSPDDWKRFRWSDGCVRKDNQICRNGEGFKRIRSVKLPDSSGYLVNVNTSIDDCEVACLNNCSCLAYGIMELSTGGYGCVTWFQKLIDARFVPENGQDIYVRVAASELDSSNRKVVIAVSVSVASLIGFLVLVVCFILWRRRKVKGKVQSQENEVEMPLYDFTTIEIATNHFSFSNKIGEGGFGPVYKGKLPCGQEIAVKRLAEGSGQGQSEFKNEILLISQLQHRNLVKLLGFCIHHEETLLIYEYMPNKSLDYFLFDGEGRSLLNWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKVSNILLDNEMNPKISDFGMARMFPEDQTMTKTQRVVGTFGYMSPEYALDGCFSLKSDVFSFGVILLEIISGKKNRGFFHTDHQLNLLGHAWKLWDEGNPLELMDATLKDQFQPSEALRCIQVGLLCVQQDPNERPTMWSVLSMLESENMLLSHPQRPGFYTERMVLKTDKSSTDISSSNEVTVTLLHGR* 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7179029 7183338 + CsaV3_1G011580.1 Csa01g01158 515655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01158 896 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 114 894 - -
Csa01g01158 896 CDD STKc_IRAK 586 852 - -
Csa01g01158 896 PIRSF SRK 92 896 IPR024171 GO:0004674
Csa01g01158 896 Pfam Domain of unknown function (DUF3403) 853 896 IPR021820 GO:0004674
Csa01g01158 896 CDD B_lectin 130 244 IPR001480 -
Csa01g01158 896 SMART ntp_6 432 511 IPR003609 -
Csa01g01158 896 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 114 894 - -
Csa01g01158 896 Pfam PAN-like domain 431 496 IPR003609 -
Csa01g01158 896 SMART serkin_6 580 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01158 896 CDD PAN_AP_plant 428 512 - -
Csa01g01158 896 SUPERFAMILY alpha-D-mannose-specific plant lectins 170 275 IPR036426 -
Csa01g01158 896 ProSiteProfiles PAN/Apple domain profile. 431 512 IPR003609 -
Csa01g01158 896 ProSiteProfiles Bulb-type lectin domain profile. 121 241 IPR001480 -
Csa01g01158 896 SMART blect_4 128 244 IPR001480 -
Csa01g01158 896 Pfam S-locus glycoprotein domain 302 410 IPR000858 GO:0048544
Csa01g01158 896 ProSiteProfiles Protein kinase domain profile. 580 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01158 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 701 713 IPR008271 GO:0004672|GO:0006468
Csa01g01158 896 Gene3D Phosphorylase Kinase; domain 1 544 655 - -
Csa01g01158 896 Gene3D - 117 242 IPR036426 -
Csa01g01158 896 Pfam Protein tyrosine and serine/threonine kinase 581 850 IPR001245 GO:0004672|GO:0006468
Csa01g01158 896 Gene3D Transferase(Phosphotransferase) domain 1 656 862 - -
Csa01g01158 896 Pfam D-mannose binding lectin 169 270 IPR001480 -
Csa01g01158 896 SUPERFAMILY Protein kinase-like (PK-like) 558 852 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01153 Csa-Chr1:7147005 Csa01g01158 Csa-Chr1:7179029 0 dispersed
Csa01g01154 Csa-Chr1:7151218 Csa01g01158 Csa-Chr1:7179029 0 dispersed
Csa01g01156 Csa-Chr1:7165615 Csa01g01158 Csa-Chr1:7179029 0 dispersed
Csa01g01158 Csa-Chr1:7179029 Csa03g04115 Csa-Chr3:36063471 0 dispersed
Csa01g01162 Csa-Chr1:7201142 Csa01g01158 Csa-Chr1:7179029 8.09E-28 dispersed
Csa07g00396 Csa-Chr7:2907579 Csa01g01158 Csa-Chr1:7179029 2.79E-13 dispersed
Csa01g01157 Csa-Chr1:7173741 Csa01g01158 Csa-Chr1:7179029 0 tandem
Csa01g01158 Csa-Chr1:7179029 Csa01g01159 Csa-Chr1:7185254 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77786 PF07714 PK_Tyr_Ser-Thr 4.50E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01158 - - csv:105434437 1616.28