Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01159 ATGATGACATCCAATCATTTGTTTTTCCTCTGTTTGATACCTCTGTTTTTCGGACACTCAATCGCTGTCGACGTCTTAAAAGTAGAGCAGTCCATTAACGACACCCAAACAATTGTTTCAGCCGCCGAAAAGTTTGAATTGGGATTCTTCACTCAACCCAAGTCCTCAGATTTCAAGTATTTGGGAATATGGTACAAAGGCCTTCCCGACTATGTAGTTTGGGTCGCAAACAGAGACAACCCAGTTCTAAACTCCTCTGCCACTCTAATATTCAATACACATGGAAATTTAATTCTCGTCAATCAAACAGGTGATGTTTTTTGGTCTTCCAATTCAACAACTGCAGTTCAATATCCAATCGCTCAACTCCTAGATACAGGTAATTTCATATTGAGAGAATCAAATTCTGGACCTCAAAATTATGTGTGGCAGAGTTTTGACTATCCCTTTGATACTCTGTTACCGGGAATGAAACTCGGGTGGGACTCCAAAACCGGGCTTAACCGAAAGTTAATATCAAGAAGAAGTCAAACCGATCCTTCCTCTGGAGATCTCAGTTATGGAGTCAACACATATGGGCTTCCACAGCTTGTGGTTTGGAAAGGAAACCAGACGATGTTCAGAGGCGGGCCATGGTATGGAGATGGCTTTAGCCAATTTCGATCCAATATAGCGAACTACATCTATAATCCCTCATTTGAGATATCATATTCAATTAATGATTCAAACAATGGCCCTTCAAGAGCTGTGTTGGATTCAAGTGGTTCCGTTATATACTATGTGTGGATCGGAGGCGACAAAAAATGGGACGTAGCTTACACGTTTACAGGATCTGGGTGCAACGACTACGAGTTATGTGGAAATTTTGGTCTTTGTAGTACTGTCTTAGTAGCAAGATGTGGTTGTTTGGATGGGTTTGAACAAAAATCAGCACAAAATTCTTCATATGGGTGTGTGAGGAAGGATGAAAAGATTTGTAGAGAAGGAGAGGGGTTTAGAAAGATAAGTGATGTAAAATGGCCTGATTCCACAAAGAAATCAGTGAGATTGAAAGTGGGTATTCACAATTGCGAGACAGAGTGCTTGAATGATTGTTCTTGCTTGGCCTACGGAAAACTTGAAGCTCCTGATATCGGACCTGCCTGTGTCACATGGTTTGACAAATTGATTGATGTCAGATTTGTTCGTGATGTTGGAACTGGAAATGATCTGTTTGTGAGAGTGGCTGCTTCAGAATTAGAACGGAGTGTAAGGAAGAGTATAATAGTTCCAGTGGTAGTGCCAATCATATCAGTCTTAATCTTCTTGGCTACAATCAGCTTTTATATCGTTAGGAATGTAAGAAGAAGAGCAAAAGCAGACAATGGAGTTACAATCACTGAGGATCTCATTCATGAGAATGAACTTGAGATGCCAATTGCAGTAATTGAAGCTGCTACTAACAATTTCTCAATTTCTAATAAGATAGGCAAAGGTGGTTTCGGACCGGTTTATAAGGGGAGACTCTCATCCGGACAAGAAATTGCAGTAAAGAAGCTAGCAGAAAGATCACGTCAAGGATTGGAGGAGTTTAAAAATGAGGTTCATTTCATTTCCCAACTTCAACATCGAAACCTCGTCAAACTTCTTGGTTTCTGCATCCATGAGGAAGAAACATTGCTTATTTATGAATACATGCCAAACAAAAGTTTGGACTACTTCCTTTTTGATGACAGAAGACGTTCTTTACTCAATTGGCAAATGAGAATTGATATCATAATTGGCATAGCTCGAGGACTACTTTATCTTCATCGAGATTCAAGACTTCGGATAATTCATAGAGATCTTAAAGCTGCAAATATTTTATTAGACAGCGAAATGAAGCCAAAGATTTCAGACTTTGGAATTGCACGCATGTTTGGCGAATATCAAATGGAAACAAAAACAAACACAGTTGTTGGAACCTATGGTTATATGTCTCCAGAATATATAATGGAAGGTTGTTTTTCATTCAAATCAGATGTTTACAGCTTTGGAGTTATACTTTTAGAGATAGTTTGCGGCAAAAGGAACCATGGTTTTCTTCACTCAGAACATAATCTGAATCTTCTCGGACACGCATGGAAGCTTTGGAATGAAGGGAAAACTTTCAAATTAATAGATGGAGTGTTGGGTGATCAATTTGAAGAATGCGAAGCACTGAAATACATAAACGTTGGACTTTTATGTGTTCAAGCACATCCGGAAGAGAGACCAATTATGTCATCCGTGCTTTCGATGTTAGAAAATGATAACATGTCGTTGATCCATCCAAAAGAGCCTGGGTTTTATGGGGAAAGATTTGTATTATCTTCTAATATTAACTCATTGTCTTCTACTTCTAATAATGTTACTATTACATTGTTAGAGGATGGTCGTTGA 2400 38.88 MMTSNHLFFLCLIPLFFGHSIAVDVLKVEQSINDTQTIVSAAEKFELGFFTQPKSSDFKYLGIWYKGLPDYVVWVANRDNPVLNSSATLIFNTHGNLILVNQTGDVFWSSNSTTAVQYPIAQLLDTGNFILRESNSGPQNYVWQSFDYPFDTLLPGMKLGWDSKTGLNRKLISRRSQTDPSSGDLSYGVNTYGLPQLVVWKGNQTMFRGGPWYGDGFSQFRSNIANYIYNPSFEISYSINDSNNGPSRAVLDSSGSVIYYVWIGGDKKWDVAYTFTGSGCNDYELCGNFGLCSTVLVARCGCLDGFEQKSAQNSSYGCVRKDEKICREGEGFRKISDVKWPDSTKKSVRLKVGIHNCETECLNDCSCLAYGKLEAPDIGPACVTWFDKLIDVRFVRDVGTGNDLFVRVAASELERSVRKSIIVPVVVPIISVLIFLATISFYIVRNVRRRAKADNGVTITEDLIHENELEMPIAVIEAATNNFSISNKIGKGGFGPVYKGRLSSGQEIAVKKLAERSRQGLEEFKNEVHFISQLQHRNLVKLLGFCIHEEETLLIYEYMPNKSLDYFLFDDRRRSLLNWQMRIDIIIGIARGLLYLHRDSRLRIIHRDLKAANILLDSEMKPKISDFGIARMFGEYQMETKTNTVVGTYGYMSPEYIMEGCFSFKSDVYSFGVILLEIVCGKRNHGFLHSEHNLNLLGHAWKLWNEGKTFKLIDGVLGDQFEECEALKYINVGLLCVQAHPEERPIMSSVLSMLENDNMSLIHPKEPGFYGERFVLSSNINSLSSTSNNVTITLLEDGR* 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7185254 7188326 + CsaV3_1G011590.1 Csa01g01159 515656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01159 799 SMART serkin_6 483 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01159 799 CDD STKc_IRAK 489 756 - -
Csa01g01159 799 ProSiteProfiles PAN/Apple domain profile. 326 409 IPR003609 -
Csa01g01159 799 Pfam Protein tyrosine and serine/threonine kinase 485 753 IPR001245 GO:0004672|GO:0006468
Csa01g01159 799 Pfam S-locus glycoprotein domain 207 309 IPR000858 GO:0048544
Csa01g01159 799 Gene3D - 20 146 IPR036426 -
Csa01g01159 799 Pfam PAN-like domain 326 392 IPR003609 -
Csa01g01159 799 SUPERFAMILY Protein kinase-like (PK-like) 471 781 IPR011009 -
Csa01g01159 799 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Csa01g01159 799 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 180 IPR036426 -
Csa01g01159 799 SMART blect_4 29 149 IPR001480 -
Csa01g01159 799 Pfam D-mannose binding lectin 72 175 IPR001480 -
Csa01g01159 799 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 15 795 - -
Csa01g01159 799 Gene3D Phosphorylase Kinase; domain 1 444 558 - -
Csa01g01159 799 PIRSF SRK 1 798 IPR024171 GO:0004674
Csa01g01159 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Csa01g01159 799 CDD PAN_AP_plant 326 409 - -
Csa01g01159 799 CDD B_lectin 30 149 IPR001480 -
Csa01g01159 799 ProSiteProfiles Protein kinase domain profile. 483 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01159 799 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 795 - -
Csa01g01159 799 Gene3D Transferase(Phosphotransferase) domain 1 559 764 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01152 Csa-Chr1:7146369 Csa01g01159 Csa-Chr1:7185254 0 dispersed
Csa01g01157 Csa-Chr1:7173741 Csa01g01159 Csa-Chr1:7185254 0 dispersed
Csa01g01159 Csa-Chr1:7185254 Csa01g01161 Csa-Chr1:7197333 1.63E-28 dispersed
Csa01g01163 Csa-Chr1:7205954 Csa01g01159 Csa-Chr1:7185254 2.05E-68 dispersed
Csa01g01158 Csa-Chr1:7179029 Csa01g01159 Csa-Chr1:7185254 0 tandem
Csa01g01159 Csa-Chr1:7185254 Csa01g01160 Csa-Chr1:7193508 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77787 PF07714 PK_Tyr_Ser-Thr 3.50E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01159 - - csv:101214988 1595.87