Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01164 ATGAAACCCATCACCATCACCAACACCATTCCATCAATCCTTCTTCTCTTCTGCTTACTTTTGGAATTTTCCAGCAGCACTGATACGATCACATCCACACAATTCCTCAAAGATTCACAGTCTATATTGTCTAATCGCGGCTTCTTCGAACTGGGTTTCTTCAGCCCTCCCCATTCTACCGATCGGTTCGTTGGAATTTGGGATAAACGAGTTCCTGTACCAACTGTTTTCTGGGTAGCTAACAGAGACAAGCCTCTCAACAAAAAATCCGGTGTTTTCGCCTTATCTAATGATGGGAATCTCCTAGTATTAGATGAACACAACAAGATTCTATGGAGCTCCAATGTTTCTAACGCTGTCGTGAATTCCACCGCTCGTCTTCTTGATTCTGGTAACCTTGTGTTGCAACACTCTGTTTCAGGAACCATTATATGGGAGAGTTTCAAAGACCCCTCAGACAAATTCTTGCCAATGATGAAATTCATCACCAACTCAATCACAAACCAGAAAGTACAAATTATGTCGTGGAAAACCCCCACCGATCCATCTTCTGGAAATTTCTCCTTCGGAATTGACCCTCTGACGATCCCTGAAGTTGTAATATGGAAAAATAGGCGCCCGTATTGGAGGTCCGGTCCATGGGATGGTCAAGTCTTTATCGGAATACCCGATATGAACACTGACTATCTCTACGGAGGTAATCTCGTAATCGAAAATAAAACTTACTCTCTCTCGATTGCTAATTCAAATGAAGCTCAGTTATTCTTCTACTACTTGAACCCCAATGGGACTTTGGTGGAGAATCAATGGAATATTAAGGATCAGAAATGGGAGGTTGCTTGGTCAGCTCCTGAAACAGAGTGTGATGTTTATGGTGCTTGTGGAGCATTTGGGGTCTGTGATTCTCAAAGAACCCCAATTTGCAGTTGCTTGAGGGGTTTTAGACCACAGAGGGAAGAGGAGTGGAATAGAGGAGTTTGGAGAAGTGGGTGTGTGAGGAGTTCTCTATTGGAGTGTGAGAAGAAGAATATCAGTGTTGAAATAGGAAAAGATCAAGATGGGTTTTTGAAGTTGGAAATGGTTAAAGTTCCAGATTCTGCAGGTTGGATTGTTGCTTCAGAAAATGATTGCAGAGTTCAGTGCTTATCAAACTGTTCATGTTCTGCTTATGCATATAAAACAGGGATTGGTTGTATGATATGGAGAGGAGATCTAATTGACATTCAACAGTTCAAGAATGGTGGAGCAGACATTTACGTTCGTGGGGCTTATTCAGAAATAGCTTACGAAAGTGGAATCAGCAAAGACGTGAAAGTAGTCATTGTAGCTTCTGTGGTAACAGGATCCTTCATACTTATCTGCTGCATATATTGCTTATGGAAAAGGAAAAGGGAAAGGGAAAGGCAGACCAAGATCAAGTTTTTGATGAACAATGGTGATGATATGAAGCATGATAAAGTGAATCAAGTTAAGCTCCAAGAGCTGCCTCTTTTTGATTTTGAGAAGTTGGCTACTGCAACTAACCATTTTCATTTCAATAACAAGCTTGGTCAGGGTGGGTTTGGGCCAGTGTACAAGGGAAAATTGGTAGATGGACAAGAAATAGCAGTAAAGAGGCTTTCGAAGACCTCTGGACAAGGGATTGAAGAGTTTAGAAATGAAGTAATGGTGATTTCAAAACTACAACATAGAAATCTTGTGCAGCTTTTTGGTTGTTGTGTGGATGGAGAAGAAAGGATGCTGGTTTACGAGTATATGCCTAATGGAAGCTTGGATTCAATCCTTTTTGATCCAACTAAAGCCAAAGTCTTAGATTGGCGAAAAAGATTCAACATCATTGAAGGAATTGTTCGAGGACTTTTGTATCTTCATAGAGATTCAAGATTAAAGATCATTCATAGAGATCTCAAAGCTAGTAACATTTTATTAGACAGAGATTTAAATCCTAAAATTTCGGATTTTGGAACTGCTAGAATTTTCTACGGCAATGAAGCTCAAGCTAAAACCACAAAAGTTGTTGGTACTTACGGCTACATGTCTCCGGAATACGTGTTGAATGGGCAATTTTCAGAGAAGTCGGATGTGTTTAGTTTTGGAGTTTTGTTGCTTGAGACTATTAGTGGAAGAAAAAATACAAGCTTCTATGAGAACGAAGATGCGTTGAGCCTTCTAGGATTTGCATGGAAATTATGGATGGAAGACAATTTAGTTGCTCTGATTGATCAAATGATGTATGAATTGCATTATGAAGCAGAGATTTTAAGGTGCATTCATGTGGGACTATTGTGTGTGCAAGAATTTGCTAAAGACAGACCAAATATAACAACAATTCTTTCAATGCTTCATAATGAGATCACAGATGTTTCAACACCGAAGCAACCTGGATTTAGTAGCAGGCAAATTGAGATACATACCAAGGGATTTGAACAAAATCATGTTGGAACTTGTTCCACAAACATGATCACAATAACCTCATTTGATGGTCGATAG 2490 39.72 MKPITITNTIPSILLLFCLLLEFSSSTDTITSTQFLKDSQSILSNRGFFELGFFSPPHSTDRFVGIWDKRVPVPTVFWVANRDKPLNKKSGVFALSNDGNLLVLDEHNKILWSSNVSNAVVNSTARLLDSGNLVLQHSVSGTIIWESFKDPSDKFLPMMKFITNSITNQKVQIMSWKTPTDPSSGNFSFGIDPLTIPEVVIWKNRRPYWRSGPWDGQVFIGIPDMNTDYLYGGNLVIENKTYSLSIANSNEAQLFFYYLNPNGTLVENQWNIKDQKWEVAWSAPETECDVYGACGAFGVCDSQRTPICSCLRGFRPQREEEWNRGVWRSGCVRSSLLECEKKNISVEIGKDQDGFLKLEMVKVPDSAGWIVASENDCRVQCLSNCSCSAYAYKTGIGCMIWRGDLIDIQQFKNGGADIYVRGAYSEIAYESGISKDVKVVIVASVVTGSFILICCIYCLWKRKRERERQTKIKFLMNNGDDMKHDKVNQVKLQELPLFDFEKLATATNHFHFNNKLGQGGFGPVYKGKLVDGQEIAVKRLSKTSGQGIEEFRNEVMVISKLQHRNLVQLFGCCVDGEERMLVYEYMPNGSLDSILFDPTKAKVLDWRKRFNIIEGIVRGLLYLHRDSRLKIIHRDLKASNILLDRDLNPKISDFGTARIFYGNEAQAKTTKVVGTYGYMSPEYVLNGQFSEKSDVFSFGVLLLETISGRKNTSFYENEDALSLLGFAWKLWMEDNLVALIDQMMYELHYEAEILRCIHVGLLCVQEFAKDRPNITTILSMLHNEITDVSTPKQPGFSSRQIEIHTKGFEQNHVGTCSTNMITITSFDGR* 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7214977 7218395 - CsaV3_1G011640.1 Csa01g01164 515661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01164 829 ProSiteProfiles Bulb-type lectin domain profile. 27 148 IPR001480 -
Csa01g01164 829 Gene3D Phosphorylase Kinase; domain 1 483 585 - -
Csa01g01164 829 ProSiteProfiles PAN/Apple domain profile. 339 423 IPR003609 -
Csa01g01164 829 SUPERFAMILY Protein kinase-like (PK-like) 495 801 IPR011009 -
Csa01g01164 829 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 13 809 - -
Csa01g01164 829 SMART serkin_6 510 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01164 829 Pfam D-mannose binding lectin 75 177 IPR001480 -
Csa01g01164 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Csa01g01164 829 ProSiteProfiles Protein kinase domain profile. 510 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01164 829 CDD PAN_AP_plant 337 423 - -
Csa01g01164 829 Pfam Protein kinase domain 510 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01164 829 Gene3D Transferase(Phosphotransferase) domain 1 586 795 - -
Csa01g01164 829 Gene3D - 22 148 IPR036426 -
Csa01g01164 829 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Csa01g01164 829 CDD B_lectin 34 151 IPR001480 -
Csa01g01164 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 215 IPR036426 -
Csa01g01164 829 PANTHER - 13 809 - -
Csa01g01164 829 SMART blect_4 33 151 IPR001480 -
Csa01g01164 829 CDD STKc_IRAK 516 781 - -
Csa01g01164 829 SMART ntp_6 350 422 IPR003609 -
Csa01g01164 829 PIRSF SRK 1 829 IPR024171 GO:0004674
Csa01g01164 829 Pfam PAN-like domain 350 408 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01164 Csa-Chr1:7214977 Csa01g01166 Csa-Chr1:7223278 0 dispersed
Csa01g01164 Csa-Chr1:7214977 Csa01g01165 Csa-Chr1:7218960 0 tandem
Csa01g01164 Csa-Chr1:7214977 Csa03g00583 Csa-Chr3:5050849 0 wgd
Csa01g01164 Csa-Chr1:7214977 Csa07g00402 Csa-Chr7:2935155 2.46E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77789 PF00069 Pkinase 2.80E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01164 - - csv:101215697 1680.23