Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01165 ATGAATTCCGCCTTTCCTCTTCTTCTTCTTCTTTCATTAGTTACGACATTCTTCTCTTCAAAGATCTTCGCCTATGGCAGTACTGATACAATCACATCAACAAATTTCATCAAACACCCTTCAACCATAATTTCCAATGCCGATTCCTTCCAATTGGGCTGGTTCTCACCTCTTAATTCCACAGCACAATACGTCGGAATTTGGTACCATCAAATTTCCATACAAACTCTAGTATGGGTTGCTAACAAAGACACCCCTCTCAACAATACTTCCGGAATTTTCACTATCTCCAACGATGGAAATCTTGTGGTCTTAGACGAATACAACACCACCATTTGGTCTTCAAATATTACTTCACCCACAGCCAATACAACCGCTCGGATTCTGGATTCAGGCAACCTTGTCTTGGAAGATCCTGTTTCAGGGGTTTTTATTTGGGAGAGCTTCGAACACCCTTCCAATTTACTCTTGCCTGCCATGAAACTTGTCACAAATAAGAGAACTCAACAGAAGCTCCAATATACCTCATGGAAAACCCCTTCTGATCCATCTAAAGGTAACTTTTCTTTAGGGTTGGATGTTATTAATATTCCTGAAGCTGTTGTTTGGAATAATAATGGAGGTATCCCATATTGGAGATCTGGTCCATGGAATGGTCAGTCTTTTATCGGCTTCCCCAATATGATATCTGTTTATCACATTGGATTTAATCTTTTGATTGAAGATCAAACTTATTCTTTCTCAATTTTTTACAATAGCGACTTACTTTACAACATGGTATTAAGTCCAGAAGGGATTTTGGAGCAACAGTTCTGGAATCAATCGAAGGGAAATTGGGAACAGAGTTGGTCGGCTTTCAGCACAGAATGTGATTATTACGGTGTTTGTGGGGCGTTTGGGGTATGTAATGCAAAAGCAACCCCTGTTTGCAGCTGTTTAACTGGGTTTAAACCGAAGGATGAAGATGAATGGAAACGAGGAAATTGGAGTAATGGGTGTGAGAGAATTACGCCATTGCAGTGTGAGAGCAGCGCTAGAAACAACAGTAGAGTTGAGGAAGATGGATTTCTGCATTTGGAAACGGTTAAAGTTCCATTTTTGGTAGAGTGGTCGAATTCGTCTAGTTCAGGGAGTGATTGCAAACAAGAGTGCTTTGAGAATTGCTTGTGTAATGCTTATGCATATGAAAATGGCATTGGTTGTATGCTATGGAAAAAAGAGTTAGTTGATGTACAGAAATTTGAAAACCTTGGAGCCAATCTTTATCTTCGACTGGCCAATGCAGAATTGCAGAAAATTAATGATGTAAAAAGATCAGAGAATAAAGGAACTGTTATAGCAATAGTGCTACCAACGACCCTAGTGATCTTCATCATTATTGTCATTTACTTCTGTTGGAGATGGAAGGCTAACAAAAATGAATATATCAAAAACGGGAAGAGATTGAAGTTGAGAAAGGACGACATGATTGGGGACGAAAGTGAATTGAAAGAACTACCTCTTTATGATTTTGAGAAGCTGGCAATCGCAACAGACAGTTTTGATTTAAGTAAGAAACTTGGACAAGGTGGTTTTGGTCCTGTGTATAAGGGAACATTGTTAGATGGACAAGAAATAGCAATAAAGAGGCTTTCAAGAGCTTCTAATCAAGGGTACGAGGAATTTATAAACGAAGTCATTGTGATTTCAAAACTACAACATAGAAATCTTGTACAGCTTCTCGGTTGTTGCATTGAAGGAGAAGAGAAGATGCTAATCTACGAGTACATGCCCAACTCAAGTCTGGATGCTTTTATCTTTGGTTCTGCTAAACAAAAACTCTTGGATTGGAGAAAAAGATTTAACATCATCAATGGAATTGCTCGAGGTCTCCTTTACCTTCATCGAGATTCAAGATTGAGAATTATTCATAGAGATTTAAAGGCAAGTAATATTTTACTAGACAAAGATATGAATCCTAAAATTTCAGACTTTGGTATGGCAAGAATTTTTGGCAGCAACGAAGTGGAAGCCAATACTATAAGGGTCGTTGGAACTTATGGATATATGTCGCCTGAGTATGCAATGCAAGGTCAATTTTCGGAGAAATCAGACGTTTTTAGCTTTGGAGTTCTATTACTTGAAATTATAAGTGGAAAAAGGAACACAGGCTTCAACTACCATGAAAATGCTTTAAGCTTATTGGAATTCGCTTGGAAGTTGTGGATAGAAAACAATCTTATCGCTTTGATTGATCCAACAATATATGAATTGAGTTATCAGTTAGAGATTTTGAGGTGCATTCAAGTGGGACTTTTATGTGTTGAAGAATCTATAAACGATCGACCAAATGTCCTCACCATTCTTTCGATGCTCAATAGTGAAATTGTGGATCTTCCTCTTCCAAAGCAACCTAGCTTTATTGCTAGAGCAGATCAGAGTGATTCAAGGATATCTCAACAATGTGTAAATAAATGTTCTACAAATGGTCTTACAGTAACCTCAATTATAGGTCGATAG 2499 37.98 MNSAFPLLLLLSLVTTFFSSKIFAYGSTDTITSTNFIKHPSTIISNADSFQLGWFSPLNSTAQYVGIWYHQISIQTLVWVANKDTPLNNTSGIFTISNDGNLVVLDEYNTTIWSSNITSPTANTTARILDSGNLVLEDPVSGVFIWESFEHPSNLLLPAMKLVTNKRTQQKLQYTSWKTPSDPSKGNFSLGLDVINIPEAVVWNNNGGIPYWRSGPWNGQSFIGFPNMISVYHIGFNLLIEDQTYSFSIFYNSDLLYNMVLSPEGILEQQFWNQSKGNWEQSWSAFSTECDYYGVCGAFGVCNAKATPVCSCLTGFKPKDEDEWKRGNWSNGCERITPLQCESSARNNSRVEEDGFLHLETVKVPFLVEWSNSSSSGSDCKQECFENCLCNAYAYENGIGCMLWKKELVDVQKFENLGANLYLRLANAELQKINDVKRSENKGTVIAIVLPTTLVIFIIIVIYFCWRWKANKNEYIKNGKRLKLRKDDMIGDESELKELPLYDFEKLAIATDSFDLSKKLGQGGFGPVYKGTLLDGQEIAIKRLSRASNQGYEEFINEVIVISKLQHRNLVQLLGCCIEGEEKMLIYEYMPNSSLDAFIFGSAKQKLLDWRKRFNIINGIARGLLYLHRDSRLRIIHRDLKASNILLDKDMNPKISDFGMARIFGSNEVEANTIRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGKRNTGFNYHENALSLLEFAWKLWIENNLIALIDPTIYELSYQLEILRCIQVGLLCVEESINDRPNVLTILSMLNSEIVDLPLPKQPSFIARADQSDSRISQQCVNKCSTNGLTVTSIIGR* 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7218960 7222381 + CsaV3_1G011650.1 Csa01g01165 515662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01165 832 PANTHER - 14 815 - -
Csa01g01165 832 Gene3D Transferase(Phosphotransferase) domain 1 590 791 - -
Csa01g01165 832 PIRSF SRK 1 832 IPR024171 GO:0004674
Csa01g01165 832 Pfam Protein tyrosine and serine/threonine kinase 516 715 IPR001245 GO:0004672|GO:0006468
Csa01g01165 832 ProSiteProfiles Protein kinase domain profile. 514 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01165 832 Pfam Domain of unknown function (DUF3403) 787 832 IPR021820 GO:0004674
Csa01g01165 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Csa01g01165 832 ProSiteProfiles PAN/Apple domain profile. 341 426 IPR003609 -
Csa01g01165 832 ProSiteProfiles Bulb-type lectin domain profile. 28 149 IPR001480 -
Csa01g01165 832 Pfam S-locus glycoprotein domain 212 319 IPR000858 GO:0048544
Csa01g01165 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 219 IPR036426 -
Csa01g01165 832 SMART ntp_6 351 425 IPR003609 -
Csa01g01165 832 Pfam D-mannose binding lectin 76 178 IPR001480 -
Csa01g01165 832 Pfam PAN-like domain 352 411 IPR003609 -
Csa01g01165 832 SUPERFAMILY Protein kinase-like (PK-like) 497 806 IPR011009 -
Csa01g01165 832 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 14 815 - -
Csa01g01165 832 Gene3D - 22 149 IPR036426 -
Csa01g01165 832 CDD B_lectin 34 152 IPR001480 -
Csa01g01165 832 Gene3D Phosphorylase Kinase; domain 1 490 589 - -
Csa01g01165 832 SMART blect_4 34 152 IPR001480 -
Csa01g01165 832 CDD STKc_IRAK 520 786 - -
Csa01g01165 832 CDD PAN_AP_plant 337 426 - -
Csa01g01165 832 SMART serkin_6 514 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01165 Csa-Chr1:7218960 Csa01g01168 Csa-Chr1:7234621 0 dispersed
Csa01g01164 Csa-Chr1:7214977 Csa01g01165 Csa-Chr1:7218960 0 tandem
Csa01g01165 Csa-Chr1:7218960 Csa01g01166 Csa-Chr1:7223278 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77790 PF07714 PK_Tyr_Ser-Thr 6.10E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01165 - - csv:105435156 1687.55