Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01166 ATGAATAAAACAAGACATGGAATTTCTCTTCTTCTCCTTCTTTCATCGACATGTTTCTTTTCAAGAATTTGCTATGGCGGAGATACAATTACATCAACAAATTTCATCAAAGACCCTGCAACTATTATATCCAATACCAGTGTCTTCAAATTGGGGTTCTTCACACCTTCAAATTCTACCCATCGATATGTTGGAATTTGGTTTGAGAAGATTTCTCCACAAACTGTTATGTGGGTTGCAAACAGAGATACCCCTCTGAATAATACTTCTGGGATTTTCACTATTTCTAACGATGGAAATCTTGTGGTTTTAGATTCAACCAATACCATCCTTTGGTCTTCAAATATTTCTTCTTCTTCTTCTTCAGCAGCCAACAACACAATCGCTCAAATTTTAGATACAGGAAACCTGGTTTTGAAAGATACTTCTTCAGGGGTGATTAAATGGGAGAGTTTCGAACACCCAACTGATAAATTCTTGCCTTCCATGAAGCTTATAACCGACAAAAGAACAAATGAGCACGTGGGTTTTACCTCGTGGAACTCCCCTTCCGATCCATCTACAGGTAATTTCTCATTTTTGTTGGATGTTCGTAATATTCCTGAAGCTGTGATTTTGAATGGTGGCAAAACTTATTGGCGATCTGGTCCATGGAATGGTCAGTCATTTATTGGAATACCTGAAATGTATTCTGTTTATCTCTCTGGGTATAACCTTGCAATCCAAGATCAAATTTACACTCTTTCTCTTGCTACAAATATTGGAGCTCAAGAAATCTTGTATTTGTTCCTAAGCTCACAAGGGAATTTTGAGCAAAGGAATTGGGATGACGAGAAGAAGCAATGGAATACTAGTTGGGTTTCTCATAAAACAGAGTGTGATTTCTATGGAACCTGTGGGGCCTTTGGAATTTGTAATGCAAAAACATCCCCTGTTTGTAGCTGTTTAACAGGGTTTAAGCCGAAGCAGGAAAAGGAATGGAATCAAGGAAATTGGAGAAGTGGGTGTGTGAGAAAGACGACATTAAAATGTGAGAAACAGTTAAACAACAACACTGATGCTAAAGAAGATGAGTTTTTAAAATTGGGAATGGTTAAAGTTCCATTCTTTGCAGAGTGGTCTTTTGCCTCTCTTTCAATTGATGATTGTCGGCGCGAGTGCTTGAGAAATTGCTCGTGTAGTTCATATGCATTTGAAAATGACATTTGTATACATTGGATGGATGACTTGATTGATACAGAACAGTTTGAGAGCGTTGGAGCTGATCTTTACCTTCGAATCGCATCCGCAGATTTACCAACAAATAGCGGAAGAAACAATAAGAGAATTATTATAGCTATAGTGATACCAGTAACGTTTGTCATCTTCATCATTGCCATATTTTTAACCATGTGGAAAAGGAAGATAAACAAACACGAGAAGAAGCTGAATATGACATCTAGTGTGAAAAAGAAGATTTTGAAACAATCAATAGTAGATGATGATATGATTGAGGGTGAAATCAAACTTGAGGAACTACCACTTTACGATTTTGAGAAGGTAGCAATTGCAACAAATTACTTTGATTTGAACAGCAAGCTTGGGCAGGGTGGCTTTGGTCCAGTGTATAAGGGGAAATTATTAAATGGACAGGAAATAGCAGTAAAGAGGCTTTCAAGAGCTTCTAAACAAGGGTATGAAGAATTTATCAATGAAGTGAGAGTGATTTCAAAGCTACAACACAGGAATCTTGTAAGACTTTTGGGTTGCTGCATTGAAGGAGAAGAGAAGATGTTAATATATGAGTATATGCCCAACCTAAGTTTGGATGCATGGATCTTTGGCTCTTCCAAACCTAAAATTCTGGATTGGAGAAAAAGGTTTAATATTGTTGATGGAATTGCTCGTGGTCTTCTTTATCTTCACAGAGATTCAAGATTGAAAATTATTCATAGAGATCTTAAGGTAAGTAATATTTTGTTAGATAAAGATTTGAACCCTAAGATTTCGGATTTTGGCATGGCAAGAATATTTGGTGGCGATGTAGTTCAAGCAAACACTGTAAGAGTCGTTGGAACTTATGGATATATGTCTCCCGAATACGCAATGCAAGGTCAATTTTCAGAGAAATCAGATGTGTTTAGCTTTGGAGTTTTGTTACTTGAAATTATTAGCGGGAGAAGAAATACAGAACTCTACCTCCATGAATCTAGCATAAGCTTACTGGGATTTGCATGGAAATTGTGGACAGAAGACAATCTTATTCCTTTGATCGAACCAACGATATATGAACCGTGCTATCAATTAGAGATTTTGAGATGCATTCATGTGGGGCTGTTATGCGTTCAAGAATTTATAAATGATCGGCCAAACGTTTCCACTATCATTTCAATGCTTAATAGTGAGATTGTTGATCTTCCTTCTCCAAAGGAACCTGGATTTGTTGGTAGACCACATGAAACTGACACAGAATCTTCTCAAAAAAAATTAGATCAATGTTCTACAAATAATGTTACACTTTCAGCAGTTATAGCACGATAA 2520 36.87 MNKTRHGISLLLLLSSTCFFSRICYGGDTITSTNFIKDPATIISNTSVFKLGFFTPSNSTHRYVGIWFEKISPQTVMWVANRDTPLNNTSGIFTISNDGNLVVLDSTNTILWSSNISSSSSSAANNTIAQILDTGNLVLKDTSSGVIKWESFEHPTDKFLPSMKLITDKRTNEHVGFTSWNSPSDPSTGNFSFLLDVRNIPEAVILNGGKTYWRSGPWNGQSFIGIPEMYSVYLSGYNLAIQDQIYTLSLATNIGAQEILYLFLSSQGNFEQRNWDDEKKQWNTSWVSHKTECDFYGTCGAFGICNAKTSPVCSCLTGFKPKQEKEWNQGNWRSGCVRKTTLKCEKQLNNNTDAKEDEFLKLGMVKVPFFAEWSFASLSIDDCRRECLRNCSCSSYAFENDICIHWMDDLIDTEQFESVGADLYLRIASADLPTNSGRNNKRIIIAIVIPVTFVIFIIAIFLTMWKRKINKHEKKLNMTSSVKKKILKQSIVDDDMIEGEIKLEELPLYDFEKVAIATNYFDLNSKLGQGGFGPVYKGKLLNGQEIAVKRLSRASKQGYEEFINEVRVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNLSLDAWIFGSSKPKILDWRKRFNIVDGIARGLLYLHRDSRLKIIHRDLKVSNILLDKDLNPKISDFGMARIFGGDVVQANTVRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGRRNTELYLHESSISLLGFAWKLWTEDNLIPLIEPTIYEPCYQLEILRCIHVGLLCVQEFINDRPNVSTIISMLNSEIVDLPSPKEPGFVGRPHETDTESSQKKLDQCSTNNVTLSAVIAR* 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7223278 7226881 + CsaV3_1G011660.1 Csa01g01166 515663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01166 839 ProSiteProfiles Protein kinase domain profile. 521 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01166 839 PIRSF SRK 2 839 IPR024171 GO:0004674
Csa01g01166 839 Gene3D - 23 152 IPR036426 -
Csa01g01166 839 ProSiteProfiles Bulb-type lectin domain profile. 27 152 IPR001480 -
Csa01g01166 839 PANTHER - 10 829 - -
Csa01g01166 839 SMART serkin_6 521 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01166 839 Pfam D-mannose binding lectin 75 180 IPR001480 -
Csa01g01166 839 Pfam Domain of unknown function (DUF3403) 794 839 IPR021820 GO:0004674
Csa01g01166 839 SMART blect_4 33 155 IPR001480 -
Csa01g01166 839 Gene3D Transferase(Phosphotransferase) domain 1 597 799 - -
Csa01g01166 839 Pfam PAN-like domain 355 413 IPR003609 -
Csa01g01166 839 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 10 829 - -
Csa01g01166 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Csa01g01166 839 Pfam Protein tyrosine and serine/threonine kinase 523 722 IPR001245 GO:0004672|GO:0006468
Csa01g01166 839 MobiDBLite consensus disorder prediction 803 823 - -
Csa01g01166 839 CDD B_lectin 33 155 IPR001480 -
Csa01g01166 839 SUPERFAMILY Protein kinase-like (PK-like) 505 792 IPR011009 -
Csa01g01166 839 ProSiteProfiles PAN/Apple domain profile. 344 428 IPR003609 -
Csa01g01166 839 Gene3D Phosphorylase Kinase; domain 1 497 596 - -
Csa01g01166 839 CDD PAN_AP_plant 340 428 - -
Csa01g01166 839 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 220 IPR036426 -
Csa01g01166 839 CDD STKc_IRAK 527 793 - -
Csa01g01166 839 SMART ntp_6 354 427 IPR003609 -
Csa01g01166 839 Pfam S-locus glycoprotein domain 213 322 IPR000858 GO:0048544
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01164 Csa-Chr1:7214977 Csa01g01166 Csa-Chr1:7223278 0 dispersed
Csa01g01166 Csa-Chr1:7223278 Csa06g03569 Csa-Chr6:28918339 0 dispersed
Csa01g01166 Csa-Chr1:7223278 Csa01g01168 Csa-Chr1:7234621 0 proximal
Csa01g01165 Csa-Chr1:7218960 Csa01g01166 Csa-Chr1:7223278 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77791 PF07714 PK_Tyr_Ser-Thr 2.70E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01166 - - csv:101215940 1659.81