Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01168 ATGTACATATACATACTGTTTTCCACTCTAATTTCTTCCATAATTATCTTTCCTTCTGCCTCACCCATGAAACCCAAAAACATCTTCCCCTTTTCATATCTTCTTTTTCTTCTTCTTCTTTCATTTACTTGTTTCTCTCCAACGTTTTGCTTAGCCAATGATACCATCACATCAGAAATTTTTATCAAAGACCCTGCTTCTTTAATTTCTAGTTCCAGTTCCTTTCAATTGGGCTTCTTCACACCTCCGAACTCTACCACCCGATATGTCGGAATTTGGTACATCAACATTCCTTCACACACAATAGTATGGGTGGCCAACAGAGAGAATCCCCTCAAAGATGCTTCTGGAATTTTCACAATTTCTATGGATGGAAATCTTGTCGTCTTAGATGGAGACCACACCGTCCTCTGGTCTTCTAATGTTTCCGCTTCTTCCAAAACCAACACAAGCGCTCGGATTTTAGATTCAGGTAACCTTGTTTTGGAAGATAATGCTTCTGGGAACATTTTATGGGAGAGTTTCAAACACCCTTCTGATAAATTCTTGCCTACCATGAAATTCATCACTAACACAAGAACAAAAGAGATGATCAAGCTTACCTCATGGAACACCTCTTCTAATCCATCCACAGGAAATTTTTCTGTAGCACTAGAAGTTGTCAGTATTCCTGAAGCTGTGATTTGGAATAATAATGACAACGTTCATTGGCGATCGGGTCCATGGAACGGTCAGTCGTTTATCGGAATACCTGAAATGGACTCTGTTTATCTCTCTGGGTTTAACCTTGTAATCCAAAACCAAGAATACACTTTCTCTGTTCCTCAAAATTACAGTGTTGAAGAATTTGGTTTTTTGTTTTTGACCTCGCAAGGGAATTTTGTACAATTGTATTGGAATCCTCAAGAGAGAGATTGGAACTTTAATTGGATTGCTATAAAGACAGAGTGTGATTACTATGGTACTTGTGGGGCGTTTGGGATTTGTGATCCAAAAGCTTCTCCTATTTGCAGCTGTTTAAAAGGGTTTAAGCCAAAGAACGAAAACGAATGGAATCAAGGAAATTGGGGTGCTGGGTGTGTGAGAAGGACGCCATTCAAATGCATTAATAACAGTGCTGAAGGAGATGGGTTTCTAACAGTTGAAAGGGTTAAATTGCCATATTTTGTACAGTGGTCTGATTTGGGGTTTACTGAAGATGATTGCAAACAAGAGTGCTTGAACAATTGTTCCTGTAATGCTTATGCATATGAAAATGGCATTCGCTGTATGCTATGGAGTAAAAGTGATTTAATTGATATACAAAAGTTTGAGAGCGGTGGAGCTACTCTTTACATACGACTGCCATATGCAGAATTAGATAATACAAATAATGGAAAAGATAAGAAGTGGATTAGTGTAGCGATTGCGGTACCAGTGACATTTGTCATCTTGATCATCATCGTCATATCGTTTTGGTGGAAATATACGACTCGCAGAAAGAAATTAAAAACCACATCTGACGACGAAGGAAAAGGAATTTTGGATCTGCCAAAGGAAGATGATATGAATAATATGATTGAGGATGATATCAAACATGAAGACCTACCTTCTTATGGTTATGAGGAGCTAGCAATTGCAACCAACAATTTTGATACGAATAACAAACTTGGGAAAGGTGGATTTGGTTCAGTGTACAAGGGAAAATTGTCAAATGGACAAGAAATAGCAGTGAAGAAGCTTGAAGGAACCTCCCGCCAAGGGTATGAAGAATTTAAAAATGAAGTGAGACTGATTTCTAAACTACAACATAGGAATCTTGTGCGTTTGTTTGGGTATTGCATCGAAAGAGAAGAGCAAATGCTAATATATGAGTACATGCCCAATCTAAGTTTGAATGCTTTAATCTTTGGCTCTTCCAAACGTGAAGTACTTTTGAATTGGAGACAGAGATTTAACATTATTGATGGAATTGCTCGAGGCCTTCTTTATCTTCATAGAGATTCAAGAGTAAAAATCATTCATAGAGATCTTAAAGCAAGTAATATTTTGTTAGACCAAGATTTTAACCCTAAAATTTCAGACTTTGGCTTGGCAAGAATTTTGTTTGACAATGAAATCCAAGCCAACACTCAAAGATTCGCTGGAACTTTTGGATATGTGTCTCCTGAATATGCAATGGACGGTCTGTTTTCAGAGAAGTCGGATGTCTACAGTTTTGGAGTTTTATTGCTTGAAATTATCAGTGGGAGAAAAAATACAGGATTCCAACCCCATGAACAAGCCTTAAGCTTATTAGAACTTGCATGGACGTTGTGGATGGAGGACAATCTTATTCCTTTAATTGAAGAAGCAATATATGAATCGTGCTACCAACAGGAGATGTTTAGATGCATTCAAGTGGGGCTGTTATGCGTTCAAAAATATGTAAATGATAGGCCAAATATCTCAACTATTATTTCAATGCTCAATAGTGAAAGCTTAGATCTACCTTCTCCAAAGGAACTTGGCTTTATTGGTAATAGTAGACCATGTGAAAGTAACAGTACAGAATCATCGTCTCAACGAAATTTAAATAAAGATTCTGTAAATAATGTTACACTCACCACAATTGTAGGTCGATAG 2604 37.4 MYIYILFSTLISSIIIFPSASPMKPKNIFPFSYLLFLLLLSFTCFSPTFCLANDTITSEIFIKDPASLISSSSSFQLGFFTPPNSTTRYVGIWYINIPSHTIVWVANRENPLKDASGIFTISMDGNLVVLDGDHTVLWSSNVSASSKTNTSARILDSGNLVLEDNASGNILWESFKHPSDKFLPTMKFITNTRTKEMIKLTSWNTSSNPSTGNFSVALEVVSIPEAVIWNNNDNVHWRSGPWNGQSFIGIPEMDSVYLSGFNLVIQNQEYTFSVPQNYSVEEFGFLFLTSQGNFVQLYWNPQERDWNFNWIAIKTECDYYGTCGAFGICDPKASPICSCLKGFKPKNENEWNQGNWGAGCVRRTPFKCINNSAEGDGFLTVERVKLPYFVQWSDLGFTEDDCKQECLNNCSCNAYAYENGIRCMLWSKSDLIDIQKFESGGATLYIRLPYAELDNTNNGKDKKWISVAIAVPVTFVILIIIVISFWWKYTTRRKKLKTTSDDEGKGILDLPKEDDMNNMIEDDIKHEDLPSYGYEELAIATNNFDTNNKLGKGGFGSVYKGKLSNGQEIAVKKLEGTSRQGYEEFKNEVRLISKLQHRNLVRLFGYCIEREEQMLIYEYMPNLSLNALIFGSSKREVLLNWRQRFNIIDGIARGLLYLHRDSRVKIIHRDLKASNILLDQDFNPKISDFGLARILFDNEIQANTQRFAGTFGYVSPEYAMDGLFSEKSDVYSFGVLLLEIISGRKNTGFQPHEQALSLLELAWTLWMEDNLIPLIEEAIYESCYQQEMFRCIQVGLLCVQKYVNDRPNISTIISMLNSESLDLPSPKELGFIGNSRPCESNSTESSSQRNLNKDSVNNVTLTTIVGR* 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7234621 7238152 + CsaV3_1G011680.1 Csa01g01168 515665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01168 867 SMART ntp_6 373 448 IPR003609 -
Csa01g01168 867 Pfam Protein tyrosine and serine/threonine kinase 546 815 IPR001245 GO:0004672|GO:0006468
Csa01g01168 867 ProSiteProfiles PAN/Apple domain profile. 368 449 IPR003609 -
Csa01g01168 867 ProSiteProfiles Bulb-type lectin domain profile. 53 175 IPR001480 -
Csa01g01168 867 CDD STKc_IRAK 550 817 - -
Csa01g01168 867 SMART blect_4 59 178 IPR001480 -
Csa01g01168 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 666 678 IPR008271 GO:0004672|GO:0006468
Csa01g01168 867 CDD B_lectin 75 178 IPR001480 -
Csa01g01168 867 SUPERFAMILY Protein kinase-like (PK-like) 519 816 IPR011009 -
Csa01g01168 867 Pfam PAN-like domain 372 433 IPR003609 -
Csa01g01168 867 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 37 845 - -
Csa01g01168 867 PANTHER - 37 845 - -
Csa01g01168 867 Gene3D - 49 176 IPR036426 -
Csa01g01168 867 CDD PAN_AP_plant 364 449 - -
Csa01g01168 867 Pfam D-mannose binding lectin 101 203 IPR001480 -
Csa01g01168 867 SUPERFAMILY alpha-D-mannose-specific plant lectins 102 209 IPR036426 -
Csa01g01168 867 ProSiteProfiles Protein kinase domain profile. 544 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01168 867 Gene3D Phosphorylase Kinase; domain 1 509 619 - -
Csa01g01168 867 Pfam S-locus glycoprotein domain 237 347 IPR000858 GO:0048544
Csa01g01168 867 SMART serkin_6 544 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01168 867 Gene3D Transferase(Phosphotransferase) domain 1 620 823 - -
Csa01g01168 867 PIRSF SRK 25 867 IPR024171 GO:0004674
Csa01g01168 867 ProSitePatterns Protein kinases ATP-binding region signature. 550 573 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01165 Csa-Chr1:7218960 Csa01g01168 Csa-Chr1:7234621 0 dispersed
Csa01g01168 Csa-Chr1:7234621 Csa06g03569 Csa-Chr6:28918339 0 dispersed
Csa01g01166 Csa-Chr1:7223278 Csa01g01168 Csa-Chr1:7234621 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77792 PF07714 PK_Tyr_Ser-Thr 1.10E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01168 - - csv:101216428 1724.91